Related papers: DNA Origami and Unknotted A-trails in Torus Graphs
The three-in-a-tree algorithm of Chudnovsky and Seymour decides in time $O(n^4)$ whether three given vertices of a graph belong to an induced tree. Here, we study four-in-a-tree for triangle-free graphs. We give a structural answer to the…
Self-assembly is one of the most promising strategies for making functional materials at the nanoscale, yet new design principles for making self-limiting architectures, rather than spatially unlimited periodic lattice structures, are…
We investigate properties of spatial graphs on the standard torus. It is known that nontrivial embeddings of planar graphs in the torus contain a nontrivial knot or a nonsplit link due to [1],[2]. Building on this and using the chirality of…
An origami (also known as square-tiled surface) is a Riemann surface covering a torus with at most one branch point. Lifting two generators of the fundamental group of the punctured torus decomposes the surface into finitely many unit…
We propose a class of toric Lagrangian A-branes on the resolved conifold that is suitable to describe torus knots on S^3. The key role is played by the SL(2,Z) transformation, which generates a general torus knot from the unknot. Applying…
A nut graph is a simple graph for which the adjacency matrix has a single zero eigenvalue such that all non-zero kernel eigenvectors have no zero entry. If the isolated vertex is excluded as trivial, nut graphs have seven or more vertices;…
In math.GT/0002110 the author's Theorems 1.1 and 1.2, combined, implied that iterated torus knots are transversally simple. This result is in error and this erratum pin points the error. In "An addendum on iterated torus knots" a more…
DNA monolayers with inherent chirality play a pivotal role across various domains, including biosensors, DNA chips, and bioelectronics. Nonetheless, conventional DNA chiral monolayers, typically constructed from single-stranded DNA (ssDNA)…
DNA based nanostructures built on a long single stranded DNA scaffold, known as DNA origamis, offer the possibility to organize various molecules at the nanometer scale in one pot experiments. The folding of the scaffold is guaranteed by…
We prove a conjecture of Sintiari and Trotignon that every even-hole-free graph of sufficiently large treewidth contains a four-vertex induced subgraph with at least five edges (that is, either the four-vertex complete graph or the unique…
If a graph can be drawn on the torus so that every two independent edges cross an even number of times, then the graph can be embedded on the torus.
A monotone drawing of a graph G is a straight-line drawing of G such that every pair of vertices is connected by a path that is monotone with respect to some direction. Trees, as a special class of graphs, have been the focus of several…
We consider surface links in the 4-space which are presented by the form of simple branched coverings over the standard torus, which we call torus-covering links. In this paper, we study unknotting numbers of torus-covering links. In some…
The notion of degree-constrained spanning hierarchies, also called k-trails, was recently introduced in the context of network routing problems. They describe graphs that are homomorphic images of connected graphs of degree at most k. First…
This is a companion paper to the paper "Hyperstability in the Erdos-Sos Conjecture". In that paper the following rough structure theorem was proved for graphs G containing no copy of a bounded degree tree T: from any such G, one can delete…
We develop a purely combinatorial framework for the systematic enumeration of knot and link diagrams supported on the thickened torus $T^2\times I$. Using the theory of maps on surfaces, cellular $4$--regular torus projections are encoded…
We introduce a new DNA tile self-assembly model: the Surface Flexible Tile Assembly Model (SFTAM), where 2D tiles are placed on host 3D surfaces made of axis-parallel unit cubes glued together by their faces, called polycubes. The bonds are…
We consider homologically essential simple closed curves on Seifert surfaces of genus one knots in $S^3$, and in particular those that are unknotted or slice in $S^3$. We completely characterize all such curves for most twist knots: they…
We classify the Fibonacci chains (F-chains) by their index sequences and construct an approximately finite dimensional (AF) $C^*$-algebra on the space of F-chains as Connes did on the space of Penrose tiling. The K-theory on this AF-algebra…
We give an exact characterization of 3-colorability of triangle-free graphs drawn in the torus, in the form of 186 "templates" (graphs with certain faces filled by arbitrary quadrangulations) such that a graph from this class is not…