Related papers: DNA Origami and Unknotted A-trails in Torus Graphs
We construct 1-parameter families of non-periodic embedded minimal surfaces of infinite genus in $T \times \mathbb{R}$, where $T$ denotes a flat 2-tori. Each of our families converges to a foliation of $T \times \mathbb{R}$ by $T$. These…
A non-singular connected algebraic curve $A$ in a simply connected algebraic surface $X$ can be knotted so that its homology class and the fundamental group of its complement in $X$ is preserved, provided $A$ is sufficiently complex (not…
Origami structures are characterized by a network of folds and vertices joining unbendable plates. For applications to mechanical design and self-folding structures, it is essential to understand the interplay between the set of folds in…
The class of all even-hole-free graphs has unbounded tree-width, as it contains all complete graphs. Recently, a class of (even-hole, $K_4$)-free graphs was constructed, that still has unbounded tree-width [Sintiari and Trotignon, 2019].…
Infinite families of 3-dimensional closed graph manifolds and closed Seifert fibered spaces are exhibited, each member of which contains an essential torus not detected by ideal points of the variety of $\text{SL}_2(\mathbb{F})$-characters…
The presence of slipknots in configurations of proteins and DNA has been shown to affect their functionality, or alter it entirely. Historically, polymers are modeled as polygonal chains in space. As an alternative to space curves, we…
To an oriented link in a solid torus we associate a trace graph in a thickened torus in such a way that links are isotopic if and only if their trace graphs can be related by moves of finitely many standard types. The key ingredient is a…
The three-in-a-tree problem is to determine if a simple undirected graph contains an induced subgraph which is a tree connecting three given vertices. Based on a beautiful characterization that is proved in more than twenty pages,…
A directed phylogenetic network is tree-child if every non-leaf vertex has a child that is not a reticulation. As a class of directed phylogenetic networks, tree-child networks are very useful from a computational perspective. For example,…
In this paper we study welded knots and their invariants. We focus on generating examples of non-trivial knotted ribbon tori as the tube of welded knots that are obtained from classical knot diagrams by welding some of the crossings.…
A hole in a graph $G$ is an induced cycle of length at least four, and an even hole is a hole of even length. The diamond is the graph obtained from the complete graph $K_4$ by removing an edge. A pyramid is a graph consisting of a triangle…
DNA self-assembly is an important tool that has a wide range of applications such as building nanostructures, the transport of target virotherapies, and nano-circuitry. Tools from graph theory can be used to encode the biological process of…
A zigzag in a map (a $2$-cell embedding of a connected graph in a connected closed $2$-dimensional surface) is a cyclic sequence of edges satisfying the following conditions: 1) any two consecutive edges lie on the same face and have a…
We conjecture the existence of four independent gradings in the colored HOMFLY homology. We describe these gradings explicitly for the rectangular colored homology of torus knots and make qualitative predictions of various interesting…
We define a new kind of Gauss diagrams to describe knots in the solid torus with projections in the annulus. We see that it provides an efficient tool for showing that a knot diagram can be fully recovered from its decorated Gauss diagram,…
Nut graphs are graphs whose adjacency matrix is singular with one-dimensional null space spanned by a vector with no zero entries. In a recent paper, Ba\v{s}i\'c, Fowler and Pisanski proved that the automorphism group of a nut graph has…
To a closed braid in a solid torus we associate a trace graph in a thickened torus in such a way that closed braids are isotopic if and only if their trace graphs can be related by trihedral and tetraherdal moves. For closed braids with a…
A digraph is connected-homogeneous if any isomorphism between finite connected induced subdigraphs extends to an automorphism of the digraph. We consider locally-finite connected-homogeneous digraphs with more than one end. In the case that…
Treewidth is a parameter that emerged from the study of minor closed classes of graphs (i.e. classes closed under vertex and edge deletion, and edge contraction). It in some sense describes the global structure of a graph. Roughly, a graph…
A 1-tangle is a properly embedded arc $\psi$ in an unknotted solid torus $V$ in $S^3$. Attaching an arc $\phi$ in the complementary solid torus $W$ to its endpoints creates a knot $K(\phi)$ called the closure of $\psi$. We show that for a…