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The understanding of mechanisms that control epigenetic changes is an important research area in modern functional biology. Epigenetic modifications such as DNA methylation are in general very stable over many cell divisions. DNA…

Genomics · Quantitative Biology 2019-01-21 Charalampos Kyriakopoulos , Pascal Giehr , Alexander Lück , Jörn Walter , Verena Wolf

DNA Methylation has been the most extensively studied epigenetic mark. Usually a change in the genotype, DNA sequence, leads to a change in the phenotype, observable characteristics of the individual. But DNA methylation, which happens in…

Genomics · Quantitative Biology 2018-07-26 Soham Chatterjee , Archana Iyer , Satya Avva , Abhai Kollara , Malaikannan Sankarasubbu

Methylation of CpG dinucleotides is a prevalent epigenetic modification that is required for proper development in vertebrates, and changes in CpG methylation are essential to cellular differentiation. Genome-wide DNA methylation assays…

Genomics · Quantitative Biology 2014-08-28 John A. Capra , Dennis Kostka

Face-based age estimation has attracted enormous attention due to wide applications to public security surveillance, human-computer interaction, etc. With vigorous development of deep learning, age estimation based on deep neural network…

Computer Vision and Pattern Recognition · Computer Science 2022-05-23 Zhicheng Cao , Kaituo Zhang , Liaojun Pang , Heng Zhao

While deep learning (DL) approaches are reaching human-level performance for many tasks, including for diagnostics AI, the focus is now on challenges possibly affecting DL deployment, including AI privacy, domain generalization, and…

Computer Vision and Pattern Recognition · Computer Science 2021-04-05 Neil Joshi , Phil Burlina

Existing domain adaptation focuses on transferring knowledge between domains with categorical indices (e.g., between datasets A and B). However, many tasks involve continuously indexed domains. For example, in medical applications, one…

Machine Learning · Computer Science 2020-09-01 Hao Wang , Hao He , Dina Katabi

Medical imaging datasets often vary due to differences in acquisition protocols, patient demographics, and imaging devices. These variations in data distribution, known as domain shift, present a significant challenge in adapting imaging…

Computer Vision and Pattern Recognition · Computer Science 2026-03-16 Doron Serebro , Tammy Riklin-Raviv

With the successful adoption of machine learning on electronic health records (EHRs), numerous computational models have been deployed to address a variety of clinical problems. However, due to the heterogeneity of EHRs, models trained on…

Machine Learning · Computer Science 2021-01-14 Yiqin Yu , Pin-Yu Chen , Yuan Zhou , Jing Mei

The insertion of deep learning in medical image analysis had lead to the development of state-of-the art strategies in several applications such a disease classification, as well as abnormality detection and segmentation. However, even the…

Image and Video Processing · Electrical Eng. & Systems 2022-02-24 Mauricio Orbes-Arteaga , Thomas Varsavsky , Lauge Sorensen , Mads Nielsen , Akshay Pai , Sebastien Ourselin , Marc Modat , M Jorge Cardoso

DNA methylation (DNAme) is a critical component of the epigenetic regulatory machinery and aberrations in DNAme patterns occur in many diseases, such as cancer. Mapping and understanding DNAme profiles offers considerable promise for…

Among the different biomarkers of aging based on omics and clinical data, DNA methylation clocks stand apart providing unmatched accuracy in assessing the biological age of both humans and animal models of aging. Here, we discuss robustness…

Genomics · Quantitative Biology 2018-11-16 Dmitriy I. Podolskiy , Vadim N. Gladyshev

Investigation of age-related genes is of great importance for multiple purposes, for instance, improving our understanding of the mechanism of ageing, increasing life expectancy, age prediction, and other healthcare applications. In his…

Genomics · Quantitative Biology 2021-11-05 Salman Mohamadi , Donald Adjeroh

Machine learning (ML) has shown great promise for revolutionizing a number of areas, including healthcare. However, it is also facing a reproducibility crisis, especially in medicine. ML models that are carefully constructed from and…

Machine Learning · Computer Science 2024-09-16 Rongguang Wang , Guray Erus , Pratik Chaudhari , Christos Davatzikos

The ability to identify time periods when individuals are most susceptible to exposures, as well as the biological mechanisms through which these exposures act, is of great public health interest. Growing evidence supports an association…

Domain adaptation investigates the problem of leveraging knowledge from a well-labeled source domain to an unlabeled target domain, where the two domains are drawn from different data distributions. Because of the distribution shifts,…

Computer Vision and Pattern Recognition · Computer Science 2019-07-12 Jingjing Li , Mengmeng Jing , Yue Xie , Ke Lu , Zi Huang

DNA methylation is a crucial regulator of gene transcription and has been linked to various diseases, including autoimmune diseases and cancers. However, diagnostics based on DNA methylation face challenges due to large feature sets and…

Machine Learning · Computer Science 2023-08-04 Pengcheng Xu , Jinpu Cai , Yulin Gao , Ziqi Rong

Biological age, which may be older or younger than chronological age due to factors such as genetic predisposition, environmental exposures, serves as a meaningful biomarker of aging processes and can inform risk stratification, treatment…

Genomics · Quantitative Biology 2025-11-11 Shuyue Jiang , Wenjing Ma , Shaojun Yu , Chang Su , Runze Yan , Jiaying Lu

DNA methylation is an important epigenetic mark that has been studied extensively for its regulatory role in biological processes and diseases. WGBS allows for genome-wide measurements of DNA methylation up to single-base resolutions, yet…

In recent years, there are various methods of estimating Biological Age (BA) have been developed. Especially with the development of machine learning (ML), there are more and more types of BA predictions, and the accuracy has been greatly…

Computer Vision and Pattern Recognition · Computer Science 2022-06-28 Zhaonian Zhang , Richard Jiang , Danny Crookes , Paul Chazot

In practical sleep stage classification, a key challenge is the variability of EEG data across different subjects and environments. Differences in physiology, age, health status, and recording conditions can lead to domain shifts between…

Signal Processing · Electrical Eng. & Systems 2025-01-08 Siyuan Zhao , Chenyu Liu , Yi Ding , Xinliang Zhou