Related papers: On the phylogeny graphs of degree-bounded digraphs

We give a density condition for when, subject to a necessary parity condition, an eulerian graph or digraph may be cellularly embedded in an orientable surface so that it has exactly two faces, each bounded by an euler circuit, one of which…

Phylogenetics is the study of the evolutionary relationships between organisms. One of the main challenges in the field is to take biological data for a group of organisms and to infer an evolutionary tree, a graph that represents these…

Four algorithms giving rise to graceful graphs from a known (non)graceful graph are described. Some necessary conditions for a graph to be highly graceful and critical are given. Finally some conjectures are made on graceful, critical and…

Phylogenetic networks are becoming of increasing interest to evolutionary biologists due to their ability to capture complex non-treelike evolutionary processes. From a combinatorial point of view, such networks are certain types of rooted…

We analyse an extremal question on the degrees of the link graphs of a finite regular graph, that is, the subgraphs induced by non-trivial spheres. We show that if $G$ is $d$-regular and connected but not complete then some link graph of…

As an application of Szemeredi's regularity lemma, Erdos-Frankl-Rodl (1986) showed that the number of graphs on vertex set {1,2,...n} with a monotone class P is $2^{(1+o(1))ex(n,P)n^2/2}$ where $ex(n,P)$ is the maximum number of edges of an…

In this paper we investigate the geometry of a discrete Bayesian network whose graph is a tree all of whose variables are binary and the only observed variables are those labeling its leaves. We provide the full geometric description of…

Chordal graphs and chordal bigraphs enjoy beautiful characterizations, in terms of forbidden subgraphs, vertex/edge orderings, vertex/edge separating sets, and tree-like representations. In this paper, we introduce chordal signed graphs and…

In this thesis we consider ordered graphs (that is, graphs with a fixed linear ordering on their vertices). We summarize and further investigations on the number of edges an ordered graph may have while avoiding a fixed forbidden ordered…

We investigate structural and algorithmic advantages of a directed version of the well-researched class of distance-hereditary graphs. Since the previously defined distance-hereditary digraphs do not permit a recursive structure, we define…

To determine that two given undirected graphs are isomorphic, we construct for them auxiliary graphs, using the breadth-first search. This makes capability to position vertices in each digraph with respect to each other. If the given graphs…

We study the question of whether, for a given class of finite graphs, one can define, for each graph of the class, a linear ordering in monadic second-order logic, possibly with the help of monadic parameters. We consider two variants of…

A graph is 2-degenerate if every subgraph contains a vertex of degree at most 2. We show that every 2-degenerate graph can be drawn with straight lines such that the drawing decomposes into 4 plane forests. Therefore, the geometric…

A digraph $D$ is an oriented graph if $D$ does not have a pair of opposite arcs. The degree of a vertex $v$ of $D$ is the sum of the in-degree and out-degree of $v.$ Let $fvs(D)$ be the minimum number of vertices whose deletion from $D$…

The majorization relation orders the degree sequences of simple graphs into posets called dominance orders. As shown by Ruch and Gutman (1979) and Merris (2002), the degree sequences of threshold and split graphs form upward-closed sets…

A bipartite graph $G=(V,E)$ with $V=V_1\cup V_2$ is biregular if all the vertices of each stable set, $V_1$ and $V_2$, have the same degree, $r$ and $s$, respectively. This paper studies difference sets derived from both Abelian and…

The competition graph of a digraph $D$ is a (simple undirected) graph which has the same vertex set as $D$ and has an edge between two distinct vertices $x$ and $y$ if and only if there exists a vertex $v$ in $D$ such that $(x,v)$ and…

We consider vertex coloring of an acyclic digraph $\Gdag$ in such a way that two vertices which have a common ancestor in $\Gdag$ receive distinct colors. Such colorings arise in a natural way when bounding space for various genetic data…

In 1962, Oystein Ore asked in which graphs there is exactly one geodesic between any two vertices. He called such graphs geodetic. In this paper, we systematically study properties of geodetic graphs, and also consider antipodal graphs, in…

We define and study the statistical models in exponential family form whose sufficient statistics are the degree distributions and the bi-degree distributions of undirected labelled simple graphs. Graphs that are constrained by the joint…