Related papers: On the phylogeny graphs of degree-bounded digraphs
It was recently shown that a large class of phylogenetic networks, the `labellable' networks, is in bijection with the set of `expanding' covers of finite sets. In this paper, we show how several prominent classes of phylogenetic networks…
We investigate the structure of conformally rigid graphs. Graphs are conformally rigid if introducing edge weights cannot increase (decrease) the second (last) eigenvalue of the Graph Laplacian. Edge-transitive graphs and distance-regular…
A 2-switch is an edge addition/deletion operation that changes adjacencies in the graph while preserving the degree of each vertex. A well known result states that graphs with the same degree sequence may be changed into each other via…
A graph G is a 2-tree if G=K_3, or G has a vertex v of degree 2, whose neighbours are adjacent, and G\v{i}s a 2-tree. A characterization of the degree sequences of 2-trees is given. This characterization yields a linear-time algorithm for…
We study minimum degree conditions for which a graph with given odd girth has a simple structure. For example, the classical work of Andr\'asfai, Erd\H os, and S\'os implies that every $n$-vertex graph with odd girth $2k+1$ and minimum…
An $n$-vertex graph is degree 3-critical if it has $2n - 2$ edges and no proper induced subgraph with minimum degree at least 3. In 1988, Erd\H{o}s, Faudree, Gy\'arf\'as, and Schelp asked whether one can always find cycles of all short…
Recent genomic and bioinformatic advances have motivated the development of numerous random network models purporting to describe graphs of biological, technological, and sociological origin. The success of a model has been evaluated by how…
We examine indivisibility for classes of graphs. We show that the class of hereditarily $\alpha$-sparse graphs is indivisible if and only if $\alpha > 2$. Additionally, we show that the following classes of graphs are indivisible: perfect…
A binary phylogenetic network may or may not be obtainable from a tree by the addition of directed edges (arcs) between tree arcs. Here, we establish a precise and easily tested criterion (based on `2-SAT') that efficiently determines…
An undirected graph is said to be cordial if there is a friendly (0,1)-labeling of the vertices that induces a friendly (0,1)-labeling of the edges. An undirected graph $G$ is said to be $(2,3)$-orientable if there exists a friendly…
Answering an open question from 2007, we construct infinite $k$-crossing-critical families of graphs that contain vertices of any prescribed odd degree, for any sufficiently large~$k$. To answer this question, we introduce several…
Phylogeny is the study of the relations between biological entities. From it, the need to compare tree-like graphs has risen and several metrics were established and researched, but since there is no definitive way to compare them, its…
We present a hybrid constraint-based/Bayesian algorithm for learning causal networks in the presence of sparse data. The algorithm searches the space of equivalence classes of models (essential graphs) using a heuristic based on…
We consider the degree-diameter problem for Cayley graphs of dihedral groups. We find upper and lower bounds on the maximum number of vertices of such a graph with diameter 2 and degree $d$. We completely determine the asymptotic behaviour…
A digraph is 2-regular if every vertex has both indegree and outdegree two. We define an embedding of a 2-regular digraph to be a 2-cell embedding of the underlying graph in a closed surface with the added property that for every…
Hajnal and Szemeredi proved that every graph G with |G|=ks and minimum degree at least k(s-1) contains k vertex disjoint s-cliques; moreover this degree bound is optimal. We extend their theorem to directed graphs by showing that every…
In this paper, we investigate the problem of finding {\it bisections} (i.e., balanced bipartitions) in graphs. We prove the following two results for {\it all} graphs $G$: (1). $G$ has a bisection where each vertex $v$ has at least $(1/4 -…
Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of…
Burr and Erd\H{o}s in 1975 conjectured, and Chv\'atal, R\"odl, Szemer\'edi and Trotter later proved, that the Ramsey number of any bounded degree graph is linear in the number of vertices. In this paper, we disprove the natural directed…
A digraph is $3$-dicritical if it cannot be vertex-partitioned into two sets inducing acyclic digraphs, but each of its proper subdigraphs can. We give a human-readable proof that the number of 3-dicritical semi-complete digraphs is finite.…