Related papers: On the phylogeny graphs of degree-bounded digraphs

Many classes of phylogenetic networks have been proposed in the literature. A feature of several of these classes is that if one restricts a network in the class to a subset of its leaves, then the resulting network may no longer lie within…

We study mechanisms that select a subset of the vertex set of a directed graph in order to maximize the minimum indegree of any selected vertex, subject to an impartiality constraint that the selection of a particular vertex is independent…

Given a digraph, an ordering of its vertices defines a backedge graph, namely the undirected graph whose edges correspond to the arcs pointing backwards with respect to the order. The degreewidth of a digraph is the minimum over all…

Aboulker et al. proved that a digraph with large enough dichromatic number contains any fixed digraph as a subdivision. The dichromatic number of a digraph is the smallest order of a partition of its vertex set into acyclic induced…

Graphical models or networks describe the statistical dependence among multiple variables and are widely used in biology (e.g., gene regulatory networks). Under appropriate assumptions, directed edges may represent causal relationships. A…

A digraph $G$ is \emph{$k$-geodetic} if for any (not necessarily distinct) vertices $u,v$ there is at most one directed walk from $u$ to $v$ with length not exceeding $k$. The order of a $k$-geodetic digraph with minimum out-degree $d$ is…

A sequence $D=(d_1,d_2,\ldots,d_n)$ of non-negative integers is called a graphic sequence if there is a simple graph with vertices $v_1,v_2,\ldots,v_n$ such that the degree of $v_i$ is $d_i$ for $1\leq i\leq n$. Given a graph theoretical…

Hovey introduced $A$-cordial labelings as a generalization of cordial and harmonious labelings \cite{Hovey}. If $A$ is an Abelian group, then a labeling $f \colon V (G) \rightarrow A$ of the vertices of some graph $G$ induces an edge…

The structure of many real networks is not locally tree-like and hence, network analysis fails to characterise their bond percolation properties. In a recent paper [P. Mann, V. A. Smith, J. B. O. Mitchell, and S. Dobson, Percolation in…

Given a Bayesian network structure (directed acyclic graph), the celebrated d-separation algorithm efficiently determines whether the network structure implies a given conditional independence relation. We show that this changes drastically…

Two genes are xenologs in the sense of Fitch if they are separated by at least one horizontal gene transfer event. Horizonal gene transfer is asymmetric in the sense that the transferred copy is distinguished from the one that remains…

Characterization of k-chordal graphs based on the existence of a "simplicial path" was shown in [Chv{\'a}tal et al. Note: Dirac-type characterizations of graphs without long chordless cycles. Discrete Mathematics, 256, 445-448, 2002]. We…

A graph is circle if its vertices are in correspondence with a family of chords in a circle in such a way that every two distinct vertices are adjacent if and only if the corresponding chords have nonempty intersection. Even though there…

The problem of finding upper bounds for minimal vertex number of graphs with a given automorphism group is addressed in this article for the case of cyclic $2$-groups. We show that for any natural $n\ge 2$ there is an undirected graph…

Orchards are a biologically relevant class of phylogenetic networks as they can describe treelike evolutionary histories augmented with horizontal transfer events. Moreover, the class has attractive mathematical characterizations that can…

We consider the Bernoulli bond percolation process (with parameter $p$) on infinite graphs and we give a general criterion for bounded degree graphs to exhibit a non-trivial percolation threshold based either on a single isoperimetric…

We prove a tropical analogue of the theorem of Hurwitz: a leafless metric graph of genus $g \ge 2$ has at most $12$ automorphisms when $g = 2$; $2^g g!$ automorphisms when $g \ge 3$. These inequalities are optimal; for each genus, we give…

To any graph we associate a sequence of integers called the gonality sequence of the graph, consisting of the minimum degrees of divisors of increasing rank on the graph. This is a tropical analogue of the gonality sequence of an algebraic…

A finite simple graph is called a 2-graph if all of its unit spheres S(x) are cyclic graphs of length 4 or larger. A 2-graph G is Eulerian if all vertex degrees of G are even. An edge refinement of a graph splits an edge (a,b) to two edges…

In this paper, we introduce a class of graphs which we call average hereditary graphs. Many graphs that occur in the usual graph theory applications belong to this class of graphs. Many popular types of graphs fall under this class, such as…