Related papers: On the phylogeny graphs of degree-bounded digraphs
Let D be an acyclic digraph. The competition graph of D is a graph which has the same vertex set as D and has an edge between x and y if and only if there exists a vertex v in D such that (x,v) and (y,v) are arcs of D. For any graph G, G…
A moplex is a natural graph structure that arises when lifting Dirac's classical theorem from chordal graphs to general graphs. While every non-complete graph has at least two moplexes, little is known about structural properties of graphs…
Recent investigations in computational biology focus on a family of 2-colored digraphs, called 2-colored best match graphs, which naturally arise from rooted phylogenetic trees. Actually the defining properties of such graphs are…
Orthologous genes, which arise through speciation, play a key role in comparative genomics and functional inference. In particular, graph-based methods allow for the inference of orthology estimates without prior knowledge of the underlying…
We consider acyclic r-colorings in graphs and digraphs: they color the vertices in r colors, each of which induces an acyclic graph or digraph. (This includes the dichromatic number of a digraph, and the arboricity of a graph.) For any…
The modelling of interconnection networks by graphs motivated the study of several extremal problems that involve well known parameters of a graph (degree, diameter, girth and order) and ask for the optimal value of one of them while…
Recently L. B. Beasley introduced $(2,3)$-cordial labelings of directed graphs in [1]. He made two conjectures which we resolve in this article. He conjectured that every orientation of a path of length at least five is $(2,3)$ cordial, and…
An important topic in the design of efficient networks is the construction of $(d,k,+\epsilon )$-digraphs, i.e. $k$-geodetic digraphs with minimum out-degree $\geq d$ and order $M(d,k)+ \epsilon $, where $M(d,k)$ represents the Moore bound…
Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…
The problem of efficiently characterizing degree sequences of simple hypergraphs is a fundamental long-standing open problem in Graph Theory. Several results are known for restricted versions of this problem. This paper adds to the list of…
We study the problem of learning the structure of an optimal Bayesian network when additional constraints are posed on the network or on its moralized graph. More precisely, we consider the constraint that the network or its moralized graph…
Moore digraphs, that is digraphs with out-degree $d$, diameter $k$ and order equal to the Moore bound $M(d,k) = 1 + d + d^2 + \dots +d^k$, arise in the study of optimal network topologies. In an attempt to find digraphs with a `Moore-like'…
An isogeny graph is a graph whose vertices are principally polarized abelian varieties and whose edges are isogenies between these varieties. In his thesis, Kohel described the structure of isogeny graphs for elliptic curves and showed that…
A network $N$ on a finite set $X$, $|X|\geq 2$, is a connected directed acyclic graph with leaf set $X$ in which every root in $N$ has outdegree at least 2 and no vertex in $N$ has indegree and outdegree equal to 1; $N$ is arboreal if the…
Bermond and Thomassen conjectured that every digraph with minimum outdegree at least $2k-1$ contains $k$ vertex disjoint cycles. So far the conjecture was verified for $k\le 3$. Here we generalise the question asking for all outdegree…
Given an integer $D$ and an ordinary isogeny class of abelian varieties defined over a finite field $\mathbb{F}_q$ with commutative $\mathbb{F}_q$-endomorphism algebra, we provide algorithms for computing all isogenies of degree dividing…
The competition graph of a directed acyclic graph D is the undirected graph on the same vertex set as D in which two distinct vertices are adjacent if they have a common out-neighbor in D. The competition number of an undirected graph G is…
A $(0,1)$-labelling of a set is said to be {\em friendly} if approximately one half the elements of the set are labelled 0 and one half labelled 1. Let $g$ be a labelling of the edge set of a graph that is induced by a labelling $f$ of the…
The mirror (or bipartite complement) mir(B) of a bipartite graph B=(X,Y,E) has the same color classes X and Y as B, and two vertices x in X and y in Y are adjacent in mir(B) if and only if xy is not in E. A bipartite graph is chordal…
A graph is maximal $k$-degenerate if each induced subgraph has a vertex of degree at most $k$ and adding any new edge to the graph violates this condition. In this paper, we provide sharp lower and upper bounds on Wiener indices of maximal…