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We present SPEAR, an open-source python library for data programming with semi supervision. The package implements several recent data programming approaches including facility to programmatically label and build training data. SPEAR…

The software for chemical interaction networks (SCINE) project aims at pushing the frontier of quantum chemical calculations on molecular structures to a new level. While calculations on individual structures as well as on simple relations…

Physics-Informed Neural Networks (PINNs) provide a mesh-free approach for solving differential equations by embedding physical constraints into neural network training. However, PINNs tend to overfit within the training domain, leading to…

Machine Learning · Computer Science 2026-03-17 Jose Marie Antonio Miñoza

We present a user-friendly and versatile tool for laser frequency stabilization. Its main focus is spectroscopy locking, but the software is suitable for lock-in techniques in general as well as bare PID operation. Besides allowing for…

Instrumentation and Detectors · Physics 2022-06-16 Benjamin Wiegand , Bastian Leykauf , Robert Jördens , Markus Krutzik

The wavelet scattering transform is an invariant signal representation suitable for many signal processing and machine learning applications. We present the Kymatio software package, an easy-to-use, high-performance Python implementation of…

This paper presents SPIROS (Streamlined, Precise, Intuitive, and Rapid Optical Simulator), a dedicated optical simulation tool developed for the design and analysis of particle physics detectors. Unlike general-purpose frameworks such as…

Instrumentation and Detectors · Physics 2026-04-10 Tatsuya Kikawa

Trajectory data represent a trace of an object that changes its position in space over time. This kind of data is complex to handle and analyze, since it is generally produced in huge quantities, often prone to errors generated by the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-31 Salman Haidri , Yaksh J. Haranwala , Vania Bogorny , Chiara Renso , Vinicius Prado da Fonseca , Amilcar Soares

In this paper we describe the main features of the software package named FITSH, intended to provide a standalone environment for analysis of data acquired by imaging astronomical detectors. The package provides utilities both for the full…

Instrumentation and Methods for Astrophysics · Physics 2015-06-03 András Pál

We have developed PyTIE (Python Topological Indices Expressions) which is defined as the collections of Python packages such as PyTIE D, PyTIE DS, PyTIE SMS DE, and PyTIE SMS DSE, which are open-source software packages and cross-platform…

Chemical Physics · Physics 2025-11-03 Sahaya Vijay Jeyaraj , Roy S , Govardhan S , Tony Augustine , Jyothish K

Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…

Quantitative Methods · Quantitative Biology 2024-05-06 Ajit J. Nirmal , Peter K. Sorger

Processing high-throughput DNA sequencing data of individuals or populations requires stringing together independent software tools with many parameters, often leading to non-reproducible pipelines and datasets. We developed grenepipe to…

Genomics · Quantitative Biology 2025-01-09 Lucas Czech , Moises Exposito-Alonso

Recently, Big Data applications have rapidly expanded into different industries. Healthcare is also one the industries willing to use big data platforms so that some big data analytics tools have been adopted in this field to some extent.…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-24 Saman Sarraf , Mehdi Ostadhashem

We present basic informations about package SPHOTOM for an automatic multicolour photometry. This package is in development for a creation of photometric pipe-line, which we plan to use in near future with our new instruments. It could…

Instrumentation and Methods for Astrophysics · Physics 2015-05-30 S. Parimucha , M. Vanko , P. Miklos

SHallow REcurrent Decoders (SHRED) provide a deep learning strategy for modeling high-dimensional dynamical systems and/or spatiotemporal data from dynamical system snapshot observations. PySHRED is a Python package that implements SHRED…

Machine Learning · Computer Science 2025-07-29 David Ye , Jan Williams , Mars Gao , Stefano Riva , Matteo Tomasetto , David Zoro , J. Nathan Kutz

Skew estimation is one of the vital tasks in document processing systems, especially for scanned document images, because its performance impacts subsequent steps directly. Over the years, an enormous number of researches focus on this…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Luan Pham , Phu Hao Hoang , Xuan Toan Mai , Tuan Anh Tran

PINT is a pure-Python framework for high-precision pulsar timing developed on top of widely used and well-tested Python libraries, supporting both interactive and programmatic data analysis workflows. We present a new frequentist framework…

We present SIPGI, a spectroscopic pipeline to reduce optical/near-infrared data from slit-based spectrographs. SIPGI is a complete spectroscopic data reduction environment which retains the high level of flexibility and accuracy typical of…

Instrumentation and Methods for Astrophysics · Physics 2022-09-13 A. Gargiulo , M. Fumana , S. Bisogni , P. Franzetti , L. P. Cassarà , B. Garilli , M. Scodeggio , G. Vietri

This paper proposes Scalene, a profiler specialized for Python. Scalene combines a suite of innovations to precisely and simultaneously profile CPU, memory, and GPU usage, all with low overhead. Scalene's CPU and memory profilers help…

Programming Languages · Computer Science 2023-03-24 Emery D. Berger , Sam Stern , Juan Altmayer Pizzorno

We present the open-source image processing software package PySAP (Python Sparse data Analysis Package) developed for the COmpressed Sensing for Magnetic resonance Imaging and Cosmology (COSMIC) project. This package provides a set of…

Instrumentation and Methods for Astrophysics · Physics 2020-07-03 S. Farrens , A. Grigis , L. El Gueddari , Z. Ramzi , Chaithya G. R. , S. Starck , B. Sarthou , H. Cherkaoui , P. Ciuciu , J. -L. Starck

In integrated circuit design, the analysis of wafer map patterns is critical to improve yield and detect manufacturing issues. We develop Wafer2Spike, an architecture for wafer map pattern classification using a spiking neural network…

Neural and Evolutionary Computing · Computer Science 2024-12-02 Abhishek Mishra , Suman Kumar , Anush Lingamoorthy , Anup Das , Nagarajan Kandasamy