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SDRcausal is a package that implements sufficient dimension reduction methods for causal inference as proposed in Ghosh, Ma, and de Luna (2021). The package implements (augmented) inverse probability weighting and outcome regression…

Computation · Statistics 2021-05-07 Mohammad Ghasempour , Xavier de Luna

Purpose: Dual-energy CT (DECT) has been used to derive relative stopping power (RSP) map by obtaining the energy dependence of photon interactions. The DECT-derived RSP maps could potentially be compromised by image noise levels and the…

Graphs and hypergraphs provide powerful abstractions for modeling interactions among a set of entities of interest and have been attracting a growing interest in the literature thanks to many successful applications in several fields. In…

We set up an evolutionary algorithm combined with density functional tight-binding (DFTB) calculations to investigate hydrogen adsorption on flat graphene and graphene monolayers curved over substrate steps. During the evolution, candidates…

Mesoscale and Nanoscale Physics · Physics 2018-08-08 G. Ozbal , J. T. Falkenberg , M. Brandbyge , R. T. Senger , H. Sevincli

Relation-aware graph structure embedding is promising for predicting multi-relational drug-drug interactions (DDIs). Typically, most existing methods begin by constructing a multi-relational DDI graph and then learning relation-aware graph…

Machine Learning · Computer Science 2023-08-21 Mengying Jiang , Guizhong Liu , Biao Zhao , Yuanchao Su , Weiqiang Jin

Symbolic regression (SR) models complex systems by discovering mathematical expressions that capture underlying relationships in observed data. However, most SR methods prioritize minimizing prediction error over identifying the governing…

Machine Learning · Computer Science 2026-03-31 Giorgio Morales , John W. Sheppard

Invariant mass spectra of di-electrons stemming from bremsstrahlung processes are calculated in a covariant diagrammatical approach for the exclusive reaction D p \to p_{\rm sp} n p e^+ e^- with detection of a forward spectator proton,…

Nuclear Theory · Physics 2008-11-26 L. P. Kaptari , B. Kampfer

Many physics and engineering applications demand Partial Differential Equations (PDE) property evaluations that are traditionally computed with resource-intensive high-fidelity numerical solvers. Data-driven surrogate models provide an…

Machine Learning · Computer Science 2023-12-18 Raphaël Pestourie , Youssef Mroueh , Chris Rackauckas , Payel Das , Steven G. Johnson

Generating molecular dynamics (MD) trajectories using deep generative models has attracted increasing attention, yet remains inherently challenging due to the limited availability of MD data and the complexities involved in modeling…

Machine Learning · Computer Science 2026-04-07 Aniketh Iyengar , Jiaqi Han , Pengwei Sun , Mingjian Jiang , Jianwen Xie , Stefano Ermon

Deep Gaussian Processes (DGPs) were proposed as an expressive Bayesian model capable of a mathematically grounded estimation of uncertainty. The expressivity of DPGs results from not only the compositional character but the distribution…

Machine Learning · Computer Science 2021-11-23 Chi-Ken Lu , Patrick Shafto

The theorems of density functional theory (DFT) and reduced density matrix functional theory (RDMFT) establish a bijective map between the external potential of a many-body system and its electron density or one-particle reduced density…

Chemical Physics · Physics 2023-02-22 Xuecheng Shao , Lukas Paetow , Mark E. Tuckerman , Michele Pavanello

Despite the recent advances in various Structural Genomics Projects, a large gap remains between the number of sequenced and structurally characterized proteins. Some reasons for this discrepancy include technical difficulties, labor, and…

Computer Vision and Pattern Recognition · Computer Science 2023-04-07 Arjang Fahim , Stephanie Irausquin , Homayoun Valafar

The adsorption energy serves as a crucial descriptor for the large-scale screening of catalysts. Nevertheless, the limited distribution of training data for the extensively utilised machine learning interatomic potential (MLIP),…

Machine Learning · Computer Science 2025-12-18 Songze Huo , Xiao-Ming Cao

Existing methods for skeleton-based action recognition mainly focus on improving the recognition accuracy, whereas the efficiency of the model is rarely considered. Recently, there are some works trying to speed up the skeleton modeling by…

Computer Vision and Pattern Recognition · Computer Science 2021-03-23 Lei Shi , Yifan Zhang , Jian Cheng , Hanqing Lu

Chaperone protein - the most disordered among all protein groups - help RNAs fold into their functional structure by destabilizing misfolded configurations or stabilizing the functional ones. But disentangling the mechanism underlying RNA…

Biomolecules · Quantitative Biology 2020-09-04 Vladimir Reinharz , Tsvi Tlusty

Dilepton production in nucleus-nucleus collisions at 1-2 A GeV as well as in elementary pp and pd reactions is studied within the microscopic HSD transport approach which includes the off-shell dynamics of vector mesons explicitly. The…

Nuclear Theory · Physics 2008-11-26 E. L. Bratkovskaya , W. Cassing

Predicting the effect of amino acid mutations on enzyme thermodynamic stability (DDG) is fundamental to protein engineering and drug design. While recent deep learning approaches have shown promise, they often process sequence and structure…

Machine Learning · Computer Science 2025-11-10 Abigail Lin

Evolutionary Algorithms (EAs) play a crucial role in the architectural configuration and training of Artificial Deep Neural Networks (DNNs), a process known as neuroevolution. However, neuroevolution is hindered by its inherent…

Neural and Evolutionary Computing · Computer Science 2024-09-17 Fergal Stapleton , Edgar Galván

The ability to anticipate technical expertise and capability evolution trends globally is essential for national and global security, especially in safety-critical domains like nuclear nonproliferation (NN) and rapidly emerging fields like…

Machine Learning · Computer Science 2023-07-20 Sameera Horawalavithana , Ellyn Ayton , Anastasiya Usenko , Robin Cosbey , Svitlana Volkova

The spark plasma sintering (SPS) process, a key technology for advanced material manufacturing, demands accurate and efficient simulation tools to capture the complex electro-thermal-mechanical interactions inherent in powder materials.…

Computational Physics · Physics 2024-12-03 A. Kumar , Z. Zhang , M. Bambach , M. Afrasiabi
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