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A new version of DNA walks, where nucleotides are regarded unequal in their contribution to a walk is introduced, which allows us to study thoroughly the "fine structure" of nucleotide sequences. The approach is based on the assumption that…
Blazar variability appears to be stochastic in nature. However, a possibility of low-dimensional chaos was considered in the past, but with no unambiguous detection so far. If present, it would constrain the emission mechanism by suggesting…
In previous work Regev used part of the representation theory of Lie superalgebras to compute the values of a character of the symmetric group whose decomposition into irreducible constituents is described by semistandard…
Genetic sequences are known to possess non-trivial composition together with symmetries in the frequencies of their components. Recently, it has been shown that symmetry and structure are hierarchically intertwined in DNA, suggesting a…
Statistical spectroscopic results using the spectral distribution theory are obtained for the structure of neutron-rich light nuclei going towards the drip line and compared to experimental values available. These results will be useful for…
It is a well-known fact that genetic sequences may contain sections with repeated units, called repeats, that differ in length over a population, with a length distribution of geometric type. A simple class of recombination models with…
Statistical properties of the site frequency spectrum associated with Lambda-coalescents are our objects of study. In particular, we derive recursions for the expected value, variance, and covariance of the spectrum, extending earlier…
Frequency tagging is a powerful approach to investigate the neural processing of sensory features, and is recently adapted to study the neural correlates of superordinate structures, i.e., chunks, in complex sequences such as speech and…
Our goal in this article is to review the known properties of the mysterious Kolakoski sequence and at the same time look at generalizations of it over arbitrary two letter alphabets. Our primary focus will here be the case where one of the…
This paper proposes a new mathematical approach to characterize native protein structures based on the discrete differential geometry of tetrahedron tiles. In the approach, local structure of proteins is classified into finite types…
A link stream is a set of triplets $(t, u, v)$ indicating that $u$ and $v$ interacted at time $t$. Link streams model numerous datasets and their proper study is crucial in many applications. In practice, raw link streams are often…
SEQUITUR is an algorithm that infers a hierarchical structure from a sequence of discrete symbols by replacing repeated phrases with a grammatical rule that generates the phrase, and continuing this process recursively. The result is a…
A better understanding of the optical properties of a device structure characterized by a random arrangement of materials with different dielectric properties at a length scale comparable to the wavelength of light is crucial for the…
Random-scan Gibbs samplers possess a natural hierarchical structure. The structure connects Gibbs samplers targeting higher dimensional distributions to those targeting lower dimensional ones. This leads to a quasi-telescoping property of…
Logographs (Chinese characters) have recursive structures (i.e. hierarchies of sub-units in logographs) that contain phonological and semantic information, as developmental psychology literature suggests that native speakers leverage on the…
The Kronecker family of the genetic matrices is investigated, which is based on the genetic matrix [C T; A G], where C, T, A, G are the letters of the genetic alphabet. The matrix [C T; A G] in the second Kronecker power is the (4*4)-matrix…
For dendrite graphs from biological experiments on mouse's retinal ganglion cells, a paper by Nakatsukasa, Saito and Woei reveals a mysterious phase transition phenomenon in the spectra of the corresponding graph Laplacian matrices. While…
Investigation on open questions about perturbation of Hermitian sequences and their spectral symbols. Results on normal sequences are also furnished.
Pattern analysis of tandem repeats in gene is an indispensable computational approach to the understanding of the gene expression and pathogenesis of diseases. This research applied a computational motif model and database techniques to…
This work investigates the multiplicity and differentiability of eigenfrequencies in structures with various symmetries. In particular, the study explores how the geometric and design variable symmetries affect the distribution of…