Related papers: Dynamics of a double-stranded DNA segment in a she…
We propose a simple nonlinear scaler displacement model to calculate the distribution of effect created by a shear stress on a double stranded DNA (dsDNA) molecule and the value of shear force $F_c$ which is required to separate the two…
The rheology of molecular brushes remains challenging to control due to the multiple length scales and relaxation processes involved and the lack of direct observation of molecular conformation during flow. We use molecular dynamics…
We study the dynamics of a single polymer subject to thermal fluctuations in a linear shear flow. The polymer is modeled as a finitely extendable nonlinear elastic FENE dumbbell. Both orientation and elongation dynamics are investigated…
Nonmagnetic particles in a carrier ferrofluid acquire an effective dipolar moment when placed in an external magnetic field. This fact leads them to form chains that will roughen due to Brownian motion when the magnetic field is decreased.…
This study presents a Eulerian theory to elucidate the molecular kinematics in polymer networks and their connection to continuum deformation, grounded in fundamental statistical physics and thermodynamics. Three key innovations are…
As an experimental model to mimic the flow of bio-fluids in the cell and the flow in tiny blood capillaries, we study the co-moving shear flow of dilute polymeric solutions. An inflection point shear flow profile is created by parallel…
Polymer stretching in random smooth flows is investigated within the framework of the FENE dumbbell model. The advecting flow is Gaussian and short-correlated in time. The stationary probability density function of polymer extension is…
Hydrodynamic interactions (HI) between segments of a polymer have long been known to strongly affect polymer stretching in laminar viscometric flows. Yet the role of HI in fluctuating turbulent flows remains unclear. Using Brownian dynamics…
We show that a sudden change in the polarization direction of the magnetic dipole moments of the atoms in a dipolar Bose-Einstein condensate (BEC) can serve as a useful probe to sense its superfluid and solid-like properties. We find that…
A mechanism of double strand breaking (DSB) in DNA due to the action of two electrons is considered. These are the electrons produced in the vicinity of DNA molecules due to ionization of water molecules with a consecutive emission of two…
We analyze the three-dimensional buckling of an elastic filament in a shear flow of a viscous fluid at low Reynolds number and high Peclet number. We apply the Euler-Bernoulli beam (elastica) theoretical model. We show the universal…
Macroscale chains have been proposed to give insight into the physics of molecular polymer systems. Nevertheless, understanding the rheological response of systems of quasi-one-dimensional semiflexible materials, such as bead-chain…
Traditional models of wormlike chains in shear flows at finite temperature approximate the equation of motion via finite difference discretization (bead and rod models). We introduce here a new method based on a spectral representation in…
The rupture of double-stranded DNA under stress is a key process in biophysics and nanotechnology. In this article we consider the shear-induced rupture of short DNA duplexes, a system that has been given new importance by recently designed…
The effect of shear flows on the thermal conductivity of polymer melts is investigated using a reversed nonequilibrium molecular dynamics (RNEMD) method. We extended the original RNEMD method to simultaneously produce spatial gradients of…
In this paper, we investigate linear stability properties of the 2D isentropic compressible Euler equations linearized around a shear flow given by a monotone profile, close to the Couette flow, with constant density, in the domain…
DNA and other biopolymers differ from classical polymers due to their torsional stiffness. This property changes the statistical character of their conformations under tension from a classical random walk to a problem we call the `torsional…
The fluid-structure interactions between flexible fibers and viscous flows play an essential role in various biological phenomena, medical problems, and industrial processes. Of particular interest is the case of particles freely…
The hybridization and dehybridization of DNA subject to tension is relevant to fundamental genetic processes and to the design of DNA-based mechanobiology assays. While strong tension accelerates DNA melting and decelerates DNA annealing,…
The generalization of the Nelson-Halperin-Young theory of 2D melting to the dynamical 2+1D quantum case is presented. The bosonic quantum crystal dualizes in superfluids or superconductors exhibiting nematic liquid crystalline orders,…