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Humans perform remarkably well in many cognitive tasks including pattern recognition. However, the neuronal mechanisms underlying this process are not well understood. Nevertheless, artificial neural networks, inspired in brain circuits,…

Neurons and Cognition · Quantitative Biology 2018-06-28 Gianluca Susi , Luis Anton Toro , Leonides Canuet , Maria Eugenia Lopez , Fernando Maestu , Claudio R. Mirasso , Ernesto Pereda

The development of models for Electronic Health Record data is an area of active research featuring a small number of public benchmark data sets. Researchers typically write custom data processing code but this hinders reproducibility and…

Machine Learning · Computer Science 2022-08-03 Philip Darke , Paolo Missier , Jaume Bacardit

SPARKX is an open-source Python package developed to analyze simulation data from heavy-ion collision experiments. By offering a comprehensive suite of tools, SPARKX simplifies data analysis workflows, supports multiple formats such as…

Data Analysis, Statistics and Probability · Physics 2026-02-02 Nils Sass , Hendrik Roch , Niklas Götz , Renata Krupczak , Carl B. Rosenkvist

PySensors is a Python package for selecting and placing a sparse set of sensors for classification and reconstruction tasks. Specifically, PySensors implements algorithms for data-driven sparse sensor placement optimization for…

Signal Processing · Electrical Eng. & Systems 2021-03-01 Brian M. de Silva , Krithika Manohar , Emily Clark , Bingni W. Brunton , Steven L. Brunton , J. Nathan Kutz

metric-learn is an open source Python package implementing supervised and weakly-supervised distance metric learning algorithms. As part of scikit-learn-contrib, it provides a unified interface compatible with scikit-learn which allows to…

Machine Learning · Computer Science 2020-07-28 William de Vazelhes , CJ Carey , Yuan Tang , Nathalie Vauquier , Aurélien Bellet

The TRAIN code, developed in 1995 as a post-processor for second-order transport maps from MAD, has been used extensively at the LEP and the LHC to study self-consistent closed orbits, tunes and chromaticities of bunch trains under the…

Accelerator Physics · Physics 2026-04-21 Michi Hostettler , Xavier Buffat , Tobias Persson , Tatiana Pieloni , Jorg Wenninger

pyscreener is a Python library that seeks to alleviate the challenges of large-scale structure-based design using computational docking. It provides a simple and uniform interface that is agnostic to the backend docking engine with which to…

Quantitative Methods · Quantitative Biology 2022-05-05 David E. Graff , Connor W. Coley

Nowadays, neural networks act as a synonym for artificial intelligence. Present neural network models, although remarkably powerful, are inefficient both in terms of data and energy. Several alternative forms of neural networks have been…

Neural and Evolutionary Computing · Computer Science 2026-02-27 Mario Franco , Carlos Gershenson

Access to vast amounts of data along with affordable computational power stimulated the reincarnation of neural networks. The progress could not be achieved without adequate software tools, lowering the entry bar for the next generations of…

Machine Learning · Computer Science 2019-10-22 Tomasz Kornuta

AsaPy is a custom-made Python library designed to simplify and optimize the analysis of aerospace simulation data. Instead of introducing new methodologies, it excels in combining various established techniques, creating a unified,…

This paper proposes Scalene, a profiler specialized for Python. Scalene combines a suite of innovations to precisely and simultaneously profile CPU, memory, and GPU usage, all with low overhead. Scalene's CPU and memory profilers help…

Programming Languages · Computer Science 2023-03-24 Emery D. Berger , Sam Stern , Juan Altmayer Pizzorno

Trajectory data represent a trace of an object that changes its position in space over time. This kind of data is complex to handle and analyze, since it is generally produced in huge quantities, often prone to errors generated by the…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-08-31 Salman Haidri , Yaksh J. Haranwala , Vania Bogorny , Chiara Renso , Vinicius Prado da Fonseca , Amilcar Soares

We present the mathematical basis of a new approach to the analysis of temporal coding. The foundation of the approach is the construction of several families of novel distances (metrics) between neuronal impulse trains. In contrast to most…

Neurons and Cognition · Quantitative Biology 2007-05-23 Jonathan D. Victor , Keith P. Purpura

Tipping elements occur in various systems such as in socio-economics, ecology and the climate system. In many cases, the individual tipping elements are not independent from each other, but they interact across scales in time and space. To…

SkyPy is an open-source Python package for simulating the astrophysical sky. It comprises a library of physical and empirical models across a range of observables and a command-line script to run end-to-end simulations. The library provides…

Scikit-HEP is a community-driven and community-oriented project with the goal of providing an ecosystem for particle physics data analysis in Python. Scikit-HEP is a toolset of approximately twenty packages and a few "affiliated" packages.…

In this paper, we introduce the Python framework PyMGRIT, which implements the multigrid-reduction-in-time (MGRIT) algorithm for solving the (non-)linear systems arising from the discretization of time-dependent problems. The MGRIT…

Mathematical Software · Computer Science 2020-08-13 Jens Hahne , Stephanie Friedhoff , Matthias Bolten

Pattern matching is a powerful tool for symbolic computations. Applications include term rewriting systems, as well as the manipulation of symbolic expressions, abstract syntax trees, and XML and JSON data. It also allows for an intuitive…

Programming Languages · Computer Science 2017-10-09 Manuel Krebber , Henrik Barthels , Paolo Bientinesi

We introduce PyQBench, an innovative open-source framework for benchmarking gate-based quantum computers. PyQBench can benchmark NISQ devices by verifying their capability of discriminating between two von Neumann measurements. PyQBench…

Quantum Physics · Physics 2023-12-14 Konrad Jałowiecki , Paulina Lewandowska , Łukasz Pawela

Pattern matching is a powerful tool for symbolic computations, based on the well-defined theory of term rewriting systems. Application domains include algebraic expressions, abstract syntax trees, and XML and JSON data. Unfortunately, no…

Programming Languages · Computer Science 2017-10-20 Manuel Krebber , Henrik Barthels , Paolo Bientinesi