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As synchronized activity is associated with basic brain functions and pathological states, spike train synchrony has become an important measure to analyze experimental neuronal data. Many different measures of spike train synchrony have…

There has been significant research over the past two decades in developing new platforms for spiking neural computation. Current neural computers are primarily developed to mimick biology. They use neural networks which can be trained to…

Neural and Evolutionary Computing · Computer Science 2015-07-23 Xavier Lagorce , Ryad Benosman

Recently, the computational neuroscience community has pushed for more transparent and reproducible methods across the field. In the interest of unifying the domain of auditory neuroscience, naplib-python provides an intuitive and general…

Neurons and Cognition · Quantitative Biology 2023-09-20 Gavin Mischler , Vinay Raghavan , Menoua Keshishian , Nima Mesgarani

Neural Networks are notoriously difficult to inspect. We introduce comgra, an open source python library for use with PyTorch. Comgra extracts data about the internal activations of a model and organizes it in a GUI (graphical user…

Machine Learning · Computer Science 2024-08-01 Florian Dietz , Sophie Fellenz , Dietrich Klakow , Marius Kloft

sktime is an open source, Python based, sklearn compatible toolkit for time series analysis developed by researchers at the University of East Anglia (UEA), University College London and the Alan Turing Institute. A key initial goal for…

Machine Learning · Computer Science 2019-10-08 Anthony Bagnall , Franz Király , Markus Löning , Matthew Middlehurst , George Oastler

Application of deep convolutional spiking neural networks (SNNs) to artificial intelligence (AI) tasks has recently gained a lot of interest since SNNs are hardware-friendly and energy-efficient. Unlike the non-spiking counterparts, most of…

Neural and Evolutionary Computing · Computer Science 2019-07-17 Milad Mozafari , Mohammad Ganjtabesh , Abbas Nowzari-Dalini , Timothée Masquelier

Core computations in Graph Neural Network (GNN) training and inference are often mapped to sparse matrix operations such as sparse-dense matrix multiplication (SpMM). These sparse operations are harder to optimize by manual tuning because…

Machine Learning · Computer Science 2024-03-25 Md Saidul Hoque Anik , Pranav Badhe , Rohit Gampa , Ariful Azad

Advances in neuroscience have enabled researchers to measure the activities of large numbers of neurons simultaneously in behaving animals. We have access to the fluorescence of each of the neurons which provides a first-order approximation…

Neurons and Cognition · Quantitative Biology 2023-07-21 Abhisek Chakraborty

While current time series research focuses on developing new models, crucial questions of selecting an optimal approach for training such models are underexplored. Tsururu, a Python library introduced in this paper, bridges SoTA research…

Machine Learning · Computer Science 2025-09-22 Alina Kostromina , Kseniia Kuvshinova , Aleksandr Yugay , Andrey Savchenko , Dmitry Simakov

This article describes tsmp, an R package that implements the matrix profile concept for time series. The tsmp package is a toolkit that allows all-pairs similarity joins, motif, discords and chains discovery, semantic segmentation, etc.…

Databases · Computer Science 2021-05-19 Francisco Bischoff , Pedro Pereira Rodrigues

Finding spike-based learning algorithms that can be implemented within the local constraints of neuromorphic systems, while achieving high accuracy, remains a formidable challenge. Equilibrium Propagation is a promising alternative to…

Neural and Evolutionary Computing · Computer Science 2021-02-18 Erwann Martin , Maxence Ernoult , Jérémie Laydevant , Shuai Li , Damien Querlioz , Teodora Petrisor , Julie Grollier

Python is rapidly becoming the lingua franca of machine learning and scientific computing. With the broad use of frameworks such as Numpy, SciPy, and TensorFlow, scientific computing and machine learning are seeing a productivity boost on…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-01 Zane Fink , Simeng Liu , Jaemin Choi , Matthias Diener , Laxmikant V. Kale

Python for Power System Analysis (PyPSA) is a free software toolbox for simulating and optimising modern electrical power systems over multiple periods. PyPSA includes models for conventional generators with unit commitment, variable…

Physics and Society · Physics 2018-01-18 Tom Brown , Jonas Hörsch , David Schlachtberger

Within the last years, Python became more prominent in the scientific community and is now used for simulations, machine learning, and data analysis. All these tasks profit from additional compute power offered by parallelism and…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-10-26 Andreas Gocht , Robert Schöne , Jan Frenzel

We introduce the first, general purpose, slice sampling inference engine for probabilistic programs. This engine is released as part of StocPy, a new Turing-Complete probabilistic programming language, available as a Python library. We…

Artificial Intelligence · Computer Science 2015-01-21 Razvan Ranca , Zoubin Ghahramani

Instance Space Analysis is a methodology to evaluate algorithm performance across diverse problem fields. Through visualisation and exploratory data analysis techniques, Instance Space Analysis offers objective, data-driven insights into…

We present a new open-source framework for forecasting in Python. Our framework forms part of sktime, a more general machine learning toolbox for time series with scikit-learn compatible interfaces for different learning tasks. Our new…

Machine Learning · Computer Science 2020-06-09 Markus Löning , Franz Király

Spiking neural networks, also often referred to as the third generation of neural networks, carry the potential for a massive reduction in memory and energy consumption over traditional, second-generation neural networks. Inspired by the…

Neural and Evolutionary Computing · Computer Science 2022-10-27 Alexander Henkes , Jason K. Eshraghian , Henning Wessels

We present an open-source tensor network Python library for quantum many-body simulations. At its core is an abelian-symmetric tensor, implemented as a sparse block structure managed by logical layer on top of dense multi-dimensional array…

Strongly Correlated Electrons · Physics 2025-03-05 Marek M. Rams , Gabriela Wójtowicz , Aritra Sinha , Juraj Hasik

In this paper, we present resolvent4py, a parallel Python package for the analysis, model reduction and control of large-scale linear systems with millions or billions of degrees of freedom. This package provides the user with a friendly…