English
Related papers

Related papers: First-order patterning transitions on a sphere as …

200 papers

While most processes in biology are highly deterministic, stochastic mechanisms are sometimes used to increase cellular diversity, such as in the specification of sensory receptors. In the human and Drosophila eye, photoreceptors sensitive…

Cell Behavior · Quantitative Biology 2019-03-06 Haleh Ebadi , Michael Perry , Keith Short , Konstantin Klemm , Claude Desplan , Peter F. Stadler , Anita Mehta

With sequentially stacked self-attention, (optional) encoder-decoder attention, and feed-forward layers, Transformer achieves big success in natural language processing (NLP), and many variants have been proposed. Currently, almost all…

Computation and Language · Computer Science 2021-03-08 Jinhua Zhu , Lijun Wu , Yingce Xia , Shufang Xie , Tao Qin , Wengang Zhou , Houqiang Li , Tie-Yan Liu

Preference cycles are prevalent in problems of decision-making, and are contradictory when preferences are assumed to be transitive. This contradiction underlies Condorcet's Paradox, a pioneering result of Social Choice Theory, wherein…

Algebraic Topology · Mathematics 2026-04-21 Ori Livson , Siddharth Pritam , Mikhail Prokopenko

Many developmental processes in biology utilize Notch-Delta signaling to construct an ordered pattern of cellular differentiation. This signaling modality is based on nearest-neighbor contact, as opposed to the more familiar mechanism…

Molecular Networks · Quantitative Biology 2020-07-14 Eial Teomy , David A. Kessler , Herbert Levine

Traveling fronts and stationary localized patterns in bistable reaction-diffusion systems have been broadly studied for classical continuous media and regular lattices. Analogs of such non-equilibrium patterns are also possible in networks.…

Pattern Formation and Solitons · Physics 2012-10-29 Nikos E. Kouvaris , Hiroshi Kori , Alexander S. Mikhailov

The periodic swarming of bacteria is one of the simplest examples for pattern formation produced by the self-organized collective behavior of a large number of organisms. In the spectacular colonies of Proteus mirabilis (the most common…

Biological Physics · Physics 2016-09-08 Andras Czirok , Mitsugu Matsushita , Tamas Vicsek

Phyllotactic patterns, i.e. regular arrangements of leaves or seeds around a plant stem, are fascinating examples of complex structures encountered in Nature. In botany, their symmetries develop when a new primordium periodically grows in…

Chemical Physics · Physics 2024-10-03 Giulio Facchini , Marcello Budroni , Gabor Schuszter , Fabian Brau , Anne De Wit

The prime numbers have been a source of fascination for millenia and continue to surprise us. Motivated by the hyperuniformity concept, which has attracted recent attention in physics and materials science, we show that the prime numbers in…

Statistical Mechanics · Physics 2018-09-26 S. Torquato , G. Zhang , M. de Courcy-Ireland

The random first-order transition (RFOT) theory of the structural glass transition is reviewed in a pedagogical fashion. The rigidity that emerges in crystals and glassy liquids is of the same fundamental origin. In both cases, it…

Disordered Systems and Neural Networks · Physics 2015-11-20 Vassiliy Lubchenko

Conformational transitions of a single macromolecule of finite size $N$ cannot be described within standard thermodynamic framework. Taking as a basis a simple model of homopolymer exhibiting a coil-globule transition, we show that a…

Statistical Mechanics · Physics 2007-05-23 Annick Lesne , Jean-Marc Victor

Turing patterns are stationary, wave-like structures that emerge from the nonequilibrium assembly of reactive and diffusive components. While they are foundational in biophysics, their classical formulation relies on a single characteristic…

Soft Condensed Matter · Physics 2026-01-30 Siamak Mirfendereski , Ankur Gupta

The elsewhere surmised topological origin of phase transitions is given here new important evidence through the analytic study of an exactly solvable model for which both topology and thermodynamics are worked out. The model is a mean-field…

Statistical Mechanics · Physics 2009-11-10 Luca Angelani , Lapo Casetti , Marco Pettini , Giancarlo Ruocco , Francesco Zamponi

Dynamical patterns in complex networks of coupled oscillators are both of theoretical and practical interest, yet to fully reveal and understand the interplay between pattern emergence and network structure remains to be an outstanding…

Chaotic Dynamics · Physics 2017-04-03 Dongmei Song , Yafeng Wang , Xiang Gao , Shi-Xian Qu , Ying-Cheng Lai , Xingang Wang

The nucleation of a lamellar phase from a supercooled homogeneous phase in a fluctuation driven first-order transition is studied, based on a phenomenological free energy due to Brazovskii. The absence of phase coexistence in the…

patt-sol · Physics 2009-10-28 P. C. Hohenberg , J. B , Swift

The transition to turbulence is characterized by an abrupt loss of order and predictability, featuring the intermittent proliferation and decay of localized turbulent structures. En-route to becoming fully turbulent, surprisingly order…

Fluid Dynamics · Physics 2025-01-15 Roger Ayats , Lukasz Klotz , Björn Hof

The bistability of embedded elements provides a natural route through which to introduce reprogrammability to elastic meta-materials. One example of this is the soft morphable sheet, in which bistable elements that can be snapped up or…

Soft Condensed Matter · Physics 2022-12-21 Mingchao Liu , Lucie Domino , Iris Dupont de Dinechin , Matteo Taffetani , Dominic Vella

Interference phenomena are the source of some of the spectacular colors of animals and plants in nature. In some of these systems, the physical structure consists of an ordered array of layers with alternating high and low refractive…

Optics · Physics 2013-05-14 Ariel Amir , Peter Vukusic

We use a series of molecular dynamics simulations, and analytical theory, to demonstrate that a system of hard spheres confined to a narrow cylindrical channel exhibits a continuous phase transition from an isotropic fluid at low densities,…

Soft Condensed Matter · Physics 2014-09-18 Mahdi Zaeifi Yamchi , Richard K. Bowles

The theory of patterns formation for a reaction-diffusion system defined on a multiplex is developed by means of a perturbative approach. The intra-layer diffusion constants act as small parameter in the expansion and the unperturbed state…

Statistical Mechanics · Physics 2015-06-22 Malbor Asllani , Daniel M. Busiello , Timoteo Carletti , Duccio Fanelli , Gwendoline Planchon

We examine the regime between crystalline and amorphous packings of anisotropic objects on surfaces of different genus by continuously varying their size distribution or shape from monodispersed spheres to bidispersed mixtures or…

Soft Condensed Matter · Physics 2021-04-05 Zhaoyu Xie , Timothy J. Atherton