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The pharmaceutical Research and development (R&D) process is lengthy and costly, taking nearly a decade to bring a new drug to the market. However, advancements in biotechnology, computational methods, and machine learning algorithms have…

Biomolecules · Quantitative Biology 2024-01-24 Damilola Oshunyinka

Each year, seasonal influenza epidemics cause hundreds of thousands of deaths worldwide and put high loads on health care systems. A main concern for resource planning is the risk of exceptionally severe epidemics. Taking advantage of…

Applications · Statistics 2021-06-29 Maud Thomas , Holger Rootzén

The effect of secondary structure on DNA duplex formation is poorly understood. We use a coarse-grained model of DNA to show that specific 3- and 4-base pair hairpins reduce hybridization rates by factors of 2 and 10 respectively, in good…

Soft Condensed Matter · Physics 2015-12-15 John S. Schreck , Thomas E. Ouldridge , Flavio Romano , Petr Sulc , Liam Shaw , Ard A. Louis , Jonathan P. K. Doye

Influenza virus contains two highly variable envelope glycoproteins, hemagglutinin (HA) and neuraminidase (NA). The structure and properties of HA, which is responsible for binding the virus to the cell that is being infected, change…

Biomolecules · Quantitative Biology 2012-09-20 J. C. Phillips

The Big Data analytics are a logical analysis of very large scale datasets. The data analysis enhances an organization and improve the decision making process. In this article, we present Airline Delay Analysis and Prediction to analyze…

Machine Learning · Computer Science 2020-02-25 Ripon Patgiri , Sajid Hussain , Aditya Nongmeikapam

Influenza remains a significant burden on health systems. Effective responses rely on the timely understanding of the magnitude and the evolution of an outbreak. For monitoring purposes, data on severe cases of influenza in England are…

Adaptive sample size re-estimation, early stopping, and trial re-design at interim analyses can reduce expected sample sizes in randomised trials. Cluster randomised trials, in which groups of participants are randomly allocated to…

Methodology · Statistics 2026-03-09 Samuel I. Watson , James Martin

Understanding dynamics of an infectious disease helps in designing appropriate strategies for containing its spread in a population. Recent mathematical models are aimed at studying dynamics of some specific types of infectious diseases. In…

Dynamical Systems · Mathematics 2015-02-05 P. Raja Sekhara Rao , M. Naresh Kumar

Preventing infectious disease like flu from spreading to large communities is one of the most important issues for humans. One effective strategy is voluntary vaccination, however, there is always the temptation for people refusing to be…

Populations and Evolution · Quantitative Biology 2017-04-07 Genki Ichinose , Takehiro Kurisaku

Mutational escape from vaccine induced immune responses has thwarted the development of a successful vaccine against AIDS, whose causative agent is HIV, a highly mutable virus. Knowing the virus' fitness as a function of its proteomic…

The increasing computational demands of transformer models in time series classification necessitate effective optimization strategies for energy-efficient deployment. Our study presents a systematic investigation of optimization…

Machine Learning · Computer Science 2025-05-22 Arshia Kermani , Ehsan Zeraatkar , Habib Irani

Statistical static timing analysis deals with the increasing variations in manufacturing processes to reduce the pessimism in the worst case timing analysis. Because of the correlation between delays of circuit components, timing model…

Hardware Architecture · Computer Science 2017-05-16 Bing Li , Ning Chen , Manuel Schmidt , Walter Schneider , Ulf Schlichtmann

Although the recent rise and uptake of COVID-19 vaccines in the United States has been encouraging, there continues to be significant vaccine hesitancy in various geographic and demographic clusters of the adult population. Surveys, such as…

Social and Information Networks · Computer Science 2021-08-05 Sara Melotte , Mayank Kejriwal

We propose a frequentist adaptive phase 2 trial design to evaluate the safety and efficacy of three treatment regimens (doses) compared to placebo for four types of helminth (worm) infections. This trial will be carried out in four…

Background: Despite lacking scientific support, vaccine hesitancy is widespread. While vaccine damage as a scientific fact is statistically highly uncommon, emerging social and technological forces have converted probable vaccine damage…

Physics and Society · Physics 2021-04-20 Simona Nicoleta Vulpe , Cosima Rughinis

We perform an analytical sensitivity analysis for a model of a continuous-time branching process evolving on a fixed network. This allows us to determine the relative importance of the model parameters to the growth of the population on the…

Physics and Society · Physics 2015-09-08 Sophie Hautphenne , Gautier Krings , Jean-Charles Delvenne , Vincent D. Blondel

Immunogenicity is a major problem during the development of biotherapeutics since it can lead to rapid clearance of the drug and adverse reactions. The challenge for biotherapeutic design is therefore to identify mutants of the protein…

Quantitative Methods · Quantitative Biology 2018-07-04 Benjamin Schubert , Charlotta Schärfe , Pierre Dönnes , Thomas Hopf , Debora Marks , Oliver Kohlbacher

We propose a novel model-free self-learning cluster-based control strategy for general nonlinear feedback flow control technique, benchmarked for high-fidelity simulations of post-stall separated flows over an airfoil. The present approach…

Most classification methods are based on the assumption that data conforms to a stationary distribution. The machine learning domain currently suffers from a lack of classification techniques that are able to detect the occurrence of a…

Machine Learning · Statistics 2012-01-05 Alzennyr Da Silva , Yves Lechevallier , Fabrice Rossi , Francisco De A. T. De Carvahlo

Antigenic variation is the main immune escape mechanism for RNA viruses like influenza or SARS-CoV-2. While high mutation rates promote antigenic escape, they also induce large mutational loads and reduced fitness. It remains unclear how…

Populations and Evolution · Quantitative Biology 2023-07-24 Victor Chardès , Andrea Mazzolini , Thierry Mora , Aleksandra M. Walczak