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The mathematical modelling of biological systems has historically followed one of two approaches: comprehensive and minimal. In comprehensive models, the involved biological pathways are modelled independently, then brought together as an…

Dynamical Systems · Mathematics 2021-11-16 Eric Ng , Jaycee Morgan Kaufman , Lennaert van Veen , Yan Fossat

We study both theoretically and experimentally switching dynamics in surface stabilized ferroelectric liquid crystal cells with asymmetric boundary conditions. In these cells the bounding surfaces are treated differently to produce…

Soft Condensed Matter · Physics 2009-11-11 Alexei D. Kiselev , Vladimir G. Chigrinov , Eugene P. Pozhidaev

We present a mechanistic model of drug release from a multiple emulsion into an external surrounding fluid. We consider a single multi-layer droplet where the drug kinetics are described by a pure diffusive process through different liquid…

Soft Condensed Matter · Physics 2020-09-02 G. Pontrelli , E. J. Carr , A. Tiribocchi , S. Succi

We investigate the time-dependent, coherent, and dissipative dynamics of bound particles in single multilevel quantum dots in the presence of sequential tunnelling transport. We focus on the nonequilibrium regime where several channels are…

Mesoscale and Nanoscale Physics · Physics 2010-02-11 Eduardo Vaz , Jordan Kyriakidis

The flow behaviors of polymer melt composed of short chains with ten beads between parallel plates are simulated by using a hybrid method of molecular dynamics and computational fluid dynamics. Three problems are solved: creep motion under…

Soft Condensed Matter · Physics 2014-01-20 Shugo Yasuda , Ryoichi Yamamoto

Transition metal dichalcogenides exhibit a wide range of semiconducting, metallic, correlated, and topological electronic states that arise from strong coupling between lattice structure, dimensionality, and electronic degrees of freedom.…

Materials Science · Physics 2026-05-19 Anzar Ali , Md Ezaz Hasan Khan , Mahmoud Abdel-Hafiez

Polymers near the glass transition temperature Tg often exhibit a breakdown of time-temperature-superposition (TTS), with chain relaxation times and viscosity exhibiting a weaker temperature dependence than segmental relaxation times. The…

Soft Condensed Matter · Physics 2024-03-05 Peijing Yue , David S. Simmons

A novel phase field method is proposed to model the continuous transition of binary fluids exhibiting temperature sensitive miscibility gap, from immiscible state to miscible state via partially miscible states. The model is employed to…

Fluid Dynamics · Physics 2025-08-28 Anubhav Dubey , Constantin Habes , Holger Marschall , Sakir Amiroudine

Many geophysical and astrophysical phenomena are driven by turbulent fluid dynamics, containing behaviors separated by tens of orders of magnitude in scale. While direct simulations have made large strides toward understanding geophysical…

Fluid Dynamics · Physics 2018-10-10 Jonathan S Cheng , Jonathan M Aurnou , Keith Julien , Rudie P J Kunnen

We developed and experimentally verified an analytical model to describe diffusion of oligonucleotides from stable hydrogel beads. The synthesized alginate beads are Fe3+-cross-linked as well as polyelectrolyte-doped for uniformity and…

Soft Condensed Matter · Physics 2016-06-07 Vladimir Privman , Sergii Domanskyi , Roberto A. S. Luz , Nataliia Guz , M. Lawrence Glasser , Evgeny Katz

We investigate dynamical heterogeneities in the collective relaxation of a concentrated microgel system, for which the packing fraction can be conveniently varied by changing the temperature. The packing fraction dependent mechanical…

Soft Condensed Matter · Physics 2011-05-31 David A. Sessoms , Irmgard Bischofberger , Luca Cipelletti , Véronique Trappe

We introduce a three-dimensional model for polyelectrolyte hydrogel filaments operating in a fluid environment under an electric field. The formulation builds on a morphoelastic framework for inextensible and unshearable rods, such that the…

Stochastic simulation methods can be applied successfully to model exact spatio-temporally resolved reaction-diffusion systems. However, in many cases, these methods can quickly become extremely computationally intensive with increasing…

Quantitative Methods · Quantitative Biology 2016-04-29 Jonathan U. Harrison , Christian A. Yates

We present an experimental and numerical study of immiscible two-phase flow in 3-dimensional (3D) porous media to find the relationship between the volumetric flow rate ($Q$) and the total pressure difference ($\Delta P$) in the steady…

The dynamic rheology of a polymer melt composed of short chains with ten beads between rapidly oscillating plates is investigated for various oscillation frequencies by using the hybrid simulation of the molecular dynamics and computational…

Soft Condensed Matter · Physics 2014-01-08 Shugo Yasuda , Ryoichi Yamamoto

Poroelastic materials, consisting of a permeable solid matrix infiltrated with fluid, are ubiquitous in natural and engineering contexts. In poroelastic polymer solids, the elastic matrix swells to equilibrium when immersed in a solvent…

Soft Condensed Matter · Physics 2026-05-13 Chenzhuo Li , Tom Beyeler , Marc Antonio Chalhoub , John M. Kolinski

We present an experimentally guided, multi-phase, multi-species polyelectrolyte gel model to make quantitative predictions on the electro-chemical properties of articular cartilage. The mixture theory consists of two different types of…

Tissues and Organs · Quantitative Biology 2013-08-22 Sarthok Sircar , Elizabeth Aisenbrey , Stephanie J. Bryant , David M. Bortz

The hydrodynamics of viscoelastic materials (for example polymer melts and solutions) presents interesting and complex phenomena, for example instabilities and turbulent flow at very low Reynolds numbers due to normal stress effects and the…

Soft Condensed Matter · Physics 2007-05-23 Ellak Somfai , Alexander N. Morozov , Wim van Saarloos

Understanding and controlling the rheology of polymeric complex fluids that are pushed out-of-equilibrium is a fundamental problem in both industry and biology. For example, to package, repair, and replicate DNA, cells use enzymes to…

Synthetic turbulence models are a useful tool that provide realistic representations of turbulence, necessary to test theoretical results, to serve as background fields in some numerical simulations, and to test analysis tools. Models of 1D…

Fluid Dynamics · Physics 2016-11-15 Francesco Malara , Francesca Di Mare , Giuseppina Nigro , Luca Sorriso-Valvo
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