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This description includes some explanation about algorithms and also algorithms that are being implemented by Cyrus team members. The objectives of this description are to express a brief explanation about shoot, block, mark and defensive…

Measuring performance-critical characteristics of application workloads is important both for developers, who must understand and optimize the performance of codes, as well as designers and integrators of HPC systems, who must ensure that…

Software Engineering · Computer Science 2018-11-01 Beau Johnston , Josh Milthorpe

Misconceptions about program execution hinder many novice programmers. We introduce SimpliPy, a notional machine designed around a carefully chosen Python subset to clarify core control flow and scoping concepts. Its foundation is a precise…

Programming Languages · Computer Science 2025-10-21 Moida Praneeth Jain , Venkatesh Choppella

Developing parallel algorithms efficiently requires careful management of concurrency across diverse hardware architectures. C++ executors provide a standardized interface that simplifies the development process, allowing developers to…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-22 Karame Mohammadiporshokooh , Steven R. Brandt , Hartmut Kaiser

The Cellular Potts Model (CPM) is a widely used simulation paradigm for systems of interacting cells that has been used to study scenarios ranging from plant development to morphogenesis, tumour growth and cell migration. Despite their wide…

Tissues and Organs · Quantitative Biology 2023-12-18 Shabaz Sultan , Sapna Devi , Scott N. Mueller , Johannes Textor

In computer science, a preprocessor (or macro processor) is a tool that programatically alters its input, typically on the basis of inline annotations, to produce data that serves as input for another program. Preprocessors are used in…

Programming Languages · Computer Science 2020-08-04 Tristan Miller , Denis Auroux

A nuclear reactor based on MIT BEAVRS benchmark was used as a typical power generating Pressurized Water Reactor (PWR). The PARCS v3.2 nodal-diffusion core simulator was used as a full-core reactor physics solver to emulate the operation of…

Machine Learning · Computer Science 2023-12-15 Krzysztof Palmi , Wojciech Kubinski , Piotr Darnowski

The ability to capture different levels of abstraction in a system model is especially important for remote integration, testing/verification, and manufacturing of cyber-physical systems (CPSs). However, the complexity of modelling and…

Software Engineering · Computer Science 2016-01-26 Maria Spichkova , Anna Zamansky , Eitan Farchi

The Large Hadron Collider (LHC) at CERN will see an upgraded hardware configuration which will bring a new era of physics data taking and related computational challenges. To this end, it is necessary to exploit the ever increasing variety…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-12-06 Monica Dessole , Jolly Chen , Axel Naumann

Generative, pre-trained transformers (GPTs, a.k.a. "Foundation Models") have reshaped natural language processing (NLP) through their versatility in diverse downstream tasks. However, their potential extends far beyond NLP. This paper…

Machine Learning · Computer Science 2023-06-22 Matthew B. A. McDermott , Bret Nestor , Peniel Argaw , Isaac Kohane

Computer architecture design space is vast and complex. Tools are needed to explore new ideas and gain insights quickly, with low efforts and at a desired accuracy. We propose Calipers, a criticality-based framework to model key…

Performance · Computer Science 2022-01-19 Hossein Golestani , Rathijit Sen , Vinson Young , Gagan Gupta

High-Performance Computing (HPC) processors are nowadays integrated Cyber-Physical Systems demanding complex and high-bandwidth closed-loop power and thermal control strategies. To efficiently satisfy real-time multi-input multi-output…

Large language models (LLMs) have made remarkable progress in generating fluent text, but they still face a critical challenge of contextual misalignment in long-term and dynamic dialogue. When human users omit premises, simplify…

Artificial Intelligence · Computer Science 2026-03-18 Ding Wei

Mathematical models are increasingly used in both academia and the pharmaceutical industry to understand how phenotypes emerge from systems of molecular interactions. However, their current construction as monolithic sets of equations…

Molecular Networks · Quantitative Biology 2007-10-19 Aneil Mallavarapu , Matthew Thomson , Benjamin Ullian , Jeremy Gunawardena

Nauticle is a general-purpose simulation tool for the flexible and highly configurable application of particle-based methods of either discrete or continuum phenomena. It is presented that Nauticle has three distinct layers for users and…

Mathematical Software · Computer Science 2018-04-17 Balazs Toth

Science reproducibility is a cornerstone feature in scientific workflows. In most cases, this has been implemented as a way to exactly reproduce the computational steps taken to reach the final results. While these steps are often…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-21 Karan Vahi , Mats Rynge , George Papadimitriou , Duncan A. Brown , Rajiv Mayani , Rafael Ferreira da Silva , Ewa Deelman , Anirban Mandal , Eric Lyons , Michael Zink

Graphic Processing Units (GPUs) have become ubiquitous in scientific computing. However, writing efficient GPU kernels can be challenging due to the need for careful code tuning. To automatically explore the kernel optimization space,…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-23 Stijn Heldens , Ben van Werkhoven

We present KinetiX, a software toolkit to generate computationally efficient fuel-specific routines for the chemical source term, thermodynamic and mixture-averaged transport properties for use in combustion simulation codes. The C++…

Computational Physics · Physics 2025-02-25 Bogdan A. Danciu , Christos E. Frouzakis

Similar to other programming models, compilers for SYCL, the open programming model for heterogeneous computing based on C++, would benefit from access to higher-level intermediate representations. The loss of high-level structure and…

Programming Languages · Computer Science 2023-12-21 Ettore Tiotto , Víctor Pérez , Whitney Tsang , Lukas Sommer , Julian Oppermann , Victor Lomüller , Mehdi Goli , James Brodman
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