Related papers: Pattern matching in $(213,231)$-avoiding permutati…

Enumerating matchings is a classical problem in the field of enumeration algorithms. There are polynomial-delay enumeration algorithms for several settings, such as enumerating perfect matchings, maximal matchings, and (weighted) matchings…

In this note, we consider the problem of finding a step-by-step transformation between two longest increasing subsequences in a sequence, namely Longest Increasing Subsequence Reconfiguration. We give a polynomial-time algorithm for…

A matching of the set $[2n]=\{ 1,2,\ldots ,2n\}$ is a partition of $[2n]$ into blocks with two elements, i.e. a graph on $[2n]$ such that every vertex has degree one. Given two matchings $\sigma$ and $\tau$ , we say that $\sigma$ is a…

Pattern-avoiding permutations are a central object of study in both combinatorics and theoretical computer science. In this paper we design a data structure that can store any size-$n$ permutation $\tau$ that avoids an arbitrary (and…

We consider two related problems arising from a question of R. Graham on quasirandom phenomena in permutation patterns. A ``pattern'' in a permutation $\sigma$ is the order type of the restriction of $\sigma : [n] \to [n]$ to a subset $S…

In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an…

A permutation $\pi \in S_n$ is said to {\it avoid} a permutation $\sigma \in S_k$ whenever $\pi$ contains no subsequence with all of the same pairwise comparisons as $\sigma$. For any set $R$ of permutations, we write $S_n(R)$ to denote the…

We give an explicit formula for the number of permutations avoiding cyclically a consecutive pattern in terms of the spectrum of the associated operator of the consecutive pattern. As an example, the number of cyclically consecutive…

We define a class L_{n, k} of permutations that generalizes alternating (up-down) permutations and give bijective proofs of certain pattern-avoidance results for this class. As a special case of our results, we give two bijections between…

In this work, we address the problem of approximate pattern matching with wildcards. Given a pattern $P$ of length $m$ containing $D$ wildcards, a text $T$ of length $n$, and an integer $k$, our objective is to identify all fragments of $T$…

Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…

In this paper, we compute the distributions of the statistic number of crossings over permutations avoiding one of the pairs $\{321,231\}$, $\{123,132\}$ and $\{123,213\}$. The obtained results are new combinatorial interpretations of two…

We consider the streaming complexity of a fundamental task in approximate pattern matching: the $k$-mismatch problem. It asks to compute Hamming distances between a pattern of length $n$ and all length-$n$ substrings of a text for which the…

Let $S_n$ denote the set of permutations of $[n]$ and let $\sigma=\sigma_1\cdots\sigma_n\in S_n$. For a subsequence $\{\sigma_{i_j}\}_{j=1}^k$ of $\{\sigma_i\}_{i=1}^n$ of length $k\ge2$, construct the ``up/down'' sequence $V_1\cdots…

The order preserving pattern matching (OPPM) problem is, given a pattern string $p$ and a text string $t$, find all substrings of $t$ which have the same relative orders as $p$. In this paper, we consider two variants of the OPPM problem…

A set of permutations is called sign-balanced if the set contains the same number of even permutations as odd permutations. Let $S_n(\sigma_1, \sigma_2, \ldots, \sigma_r)$ be the set of permutations in the symmetric group $S_n$ which avoids…

Recently Kubica et al. (Inf. Process. Let., 2013) and Kim et al. (submitted to Theor. Comp. Sci.) introduced order-preserving pattern matching. In this problem we are looking for consecutive substrings of the text that have the same "shape"…

Extending the notion of pattern avoidance in permutations, we study matchings and set partitions whose arc diagram representation avoids a given configuration of three arcs. These configurations, which generalize 3-crossings and 3-nestings,…

Given a pattern $P$ and a text $T$, both strings over a binary alphabet, the binary jumbled string matching problem consists in telling whether any permutation of $P$ occurs in $T$. The indexed version of this problem, i.e., preprocessing a…

Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…