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We introduce the particle-hole map (PHM), a visualization tool to analyze electronic excitations in molecules in the time or frequency domain, to be used in conjunction with time-dependent density-functional theory (TDDFT) or other ab…

Chemical Physics · Physics 2015-10-15 Yonghui Li , Carsten A. Ullrich

We show that the efficient excitation energy transfer in the Fenna-Matthews-Olson molecular aggregate under realistic physiological conditions is fueled by underdamped vibrations of the embedding proteins. For this, we present numerically…

Chemical Physics · Physics 2013-11-26 P. Nalbach , C. A. Mujica-Martinez , M. Thorwart

Collective protein modes are expected to be important for facilitating energy transfer in the Fenna-Matthews-Olson (FMO) complex, however to date little work has focussed on the microscopic details of these vibrations. The nonlinear network…

Biological Physics · Physics 2016-07-07 Sarah E Morgan , Daniel J Cole , Alex W Chin

We theoretically investigate the phenomenon of electromagnetically induced transparency (EIT) of a weak probe field in hybrid optomechanics with a single three-level ($\Lambda$-type) atomic system. We report that, in the presence of…

Quantum Physics · Physics 2015-12-24 M. Javed Akram , Fazal Ghafoor , Farhan Saif

Molecular systems containing donor-bridge-acceptor sites or molecular antennas constitute promising candidates for organic photovoltaic device implementation. Photo-induced electron transfer in multi-chromophore molecular systems is defined…

Chemical Physics · Physics 2021-06-09 Duvalier Madrid-Úsuga , John H. Reina

The field of molecular electronics has emerged from efforts to understand electron propagation through single molecules and to use them in electronic circuits. Serving as a testbed for advanced theoretical methods, it reveals a significant…

Mesoscale and Nanoscale Physics · Physics 2024-08-02 R. Tuovinen , Y. Pavlyukh

The present paper gives an elaborate theoretical description of a new molecular charge transport mechanism applying to a single molecule trapped between two macroscopic electrodes in a solid state device. It is shown by a Hubbard type model…

Mesoscale and Nanoscale Physics · Physics 2009-11-11 Per Hedegard , Thomas Bjornholm

We investigate electron transport through single conjugated molecules - including benzenedithiol, oligo-phenylene-ethynylenes of different lengths, and a ferrocene-containing molecule sandwiched between two gold electrodes with different…

Mesoscale and Nanoscale Physics · Physics 2009-08-12 San-Huang Ke , Harold U. Baranger , Weitao Yang

Biomolecular light-harvesting antennas operate as nanoscale devices in a regime where the coherent interactions of individual light, matter and vibrational quanta are non-perturbatively strong. The complex behaviour arising from this could,…

Quantum Physics · Physics 2020-07-28 A. W. Chin , B. Le Dé , E. Mangaud , O. Atabek , M. Desouter-Lecomte

We study within the perturbative many-body $GW$ and Bethe-Salpeter approach the low lying singlet charge-transfer excitations in molecular donor-acceptor complexes associating benzene, naphtalene and anthracene derivatives with the…

Materials Science · Physics 2015-05-30 X. Blase , C. Attaccalite

Beyond the dielectric continuum description initiated by Marcus theory, the nowadays standard theoretical approach to study electron transfer (ET) reactions in solution or at interfaces is to use classical force field or ab initio Molecular…

Interfacial electron transfer (IET) dynamics in 1,1'-dioctadecyl-3, 3, 3', 3'-tetramethylindodicarbocyanine (DiD) dye molecules / indium tin oxide (ITO) film system have been probed at the ensemble and single-molecule level by recording the…

Atomic and Molecular Clusters · Physics 2017-09-13 Guofeng Zhang , Liantuan Xiao , Ruiyun Chen , Yan Gao , Xiaobo Wang , Suotang Jia

The Fenna Mathews Olson (FMO) complex of green sulphur bacteria is an example of a photosynthetic pigment protein complex, in which the electronic properties of the pigments are modified by the protein environment to promote efficient…

Biomolecules · Quantitative Biology 2014-07-23 Alexander S. Fokas , Daniel J. Cole , Alex W. Chin

We present the first in a series of microscopic studies of electrical transport through individual molecules with metallic contacts. We view the molecules as ``heterostructures'' composed of chemically well-defined atomic groups, and…

Mesoscale and Nanoscale Physics · Physics 2009-11-10 Yongqiang Xue , Mark A. Ratner

Single molecule scanning tunneling spectroscopy (STS), with dephasing due to elastic and inelastic scattering, is of some current interest. Motivated by this, we report an extended Huckel theory (EHT) based mean-field Non-equilibrium…

Mesoscale and Nanoscale Physics · Physics 2008-09-26 Hassan Raza

Excitation energy transfer (EET) is one of the most important processes in both natural and artificial chemical systems including, for example, photosynthetic complexes and organic solar cells. The EET rate, however, is strongly suppressed…

Chemical Physics · Physics 2018-02-27 Nguyen Thanh Phuc , Akihito Ishizaki

A variety of open quantum networks are currently under intense examination to model energy transport in photosynthetic systems. Here we study the coherent transfer of a quantum excitation over a network incoherently coupled with a…

Quantum Physics · Physics 2015-03-18 Lorenzo Campos Venuti , Paolo Zanardi

Studies of nanoscale biological transport often use a mean-field approximation that is exact only when the system is at equilibrium and there are no interactions between particles on different sites in the network. We explore the…

Biological Physics · Physics 2022-11-01 Kiriko Terai , Jonathon L. Yuly , Peng Zhang , David N. Beratan

Monte Carlo simulations are a powerful tool to investigate the thermodynamic properties of atomic systems. In practice however, sampling of the complete configuration space is often hindered by high energy barriers between different regions…

Statistical Mechanics · Physics 2020-05-04 Jonas A. Finkler , Stefan Goedecker

We present a theory that efficiently describes the quantum dynamics of an electronic excitation that is coupled to a continuous, highly structured phonon environment. Based on a stochastic approach to non-Markovian open quantum systems, we…

Quantum Physics · Physics 2009-11-05 Jan Roden , Alexander Eisfeld , Wolfgang Wolff , Walter T. Strunz