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A generalised model for interacting self-avoiding trails on the square lattice is presented and studied using numerical transfer matrix methods. The model differentiates between on-site double visits corresponding to collisions, and…

Statistical Mechanics · Physics 2015-05-30 Damien P. Foster

We consider a simple cubic lattice self-avoiding walk model of 3-star polymers adsorbed at a surface and then desorbed by pulling with an externally applied force. We determine rigorously the free energy of the model in terms of properties…

Statistical Mechanics · Physics 2018-05-09 EJ Janse van Rensburg , S G Whittington

Self-avoiding walks (SAWs) were introduced in chemistry to model the real-life behavior of chain-like entities such as solvents and polymers, whose physical volume prohibits multiple occupation of the same spatial point. In mathematics, a…

Data Structures and Algorithms · Computer Science 2013-10-01 Franc Brglez

We find, and analyse, the exact solution of two friendly directed walks, modelling polymers, which interact with a wall via contact interactions. We specifically consider two walks that begin and end together so as to imitate a polygon. We…

Statistical Mechanics · Physics 2015-06-11 Aleksander L. Owczarek , Andrew Rechnitzer , Thomas Wong

We introduce a two-dimensional lattice model for the description of knotted polymer rings. A polymer configuration is modeled by a closed polygon drawn on the square diagonal lattice, with possible crossings describing pairs of strands of…

Statistical Mechanics · Physics 2007-05-23 Emmanuel Guitter , Enzo Orlandini

We propose an algorithm based on local growth rules for kinetically generating self avoiding walk configurations at any given temperature. This algorithm, called the Interacting Growth Walk (IGW) algorithm, does not suffer from attrition on…

Statistical Mechanics · Physics 2007-05-23 S. L. Narasimhan , P. S. R. Krishna , K. P. N. Murthy , M. Ramanadham

We show that Wang-Landau sampling, combined with suitable Monte Carlo trial moves, provides a powerful method for both the ground state search and the determination of the density of states for the hydrophobic-polar (HP) protein model and…

Soft Condensed Matter · Physics 2015-03-17 Thomas Wüst , David P. Landau

An infinite hierarchy of layering transitions exists for model polymers in solution under poor solvent or low temperatures and near an attractive surface. A flat histogram stochastic growth algorithm known as FlatPERM has been used on a…

Statistical Mechanics · Physics 2009-11-10 J. Krawczyk , A. L. Owczarek , T. Prellberg , A. Rechnitzer

We provide an introductory account of a tricritical phase diagram, in the setting of a mean-field random walk model of a polymer density transition, and clarify the nature of the density transition in this context. We consider a…

Mathematical Physics · Physics 2020-11-25 Roland Bauerschmidt , Gordon Slade

A two-dimensional square-lattice model for the formation of secondary structures in proteins, the hydrogen-bonding model, is extended to include the effects of solvent quality. This is achieved by allowing configuration-dependent…

Statistical Mechanics · Physics 2009-11-13 D P Foster , C Pinettes

In two dimensions polymer collapse has been shown to be complex with multiple low temperature states and multi-critical points. Recently, strong numerical evidence has been provided for a long-standing prediction of universal scaling of…

Statistical Mechanics · Physics 2018-03-14 A Narros , A L Owczarek , T Prellberg

This is a rather personal review of the problem of self-avoiding walks and polygons. After defining the problem, and outlining what is known rigorously and what is merely conjectured, I highlight the major outstanding problems. I then give…

Mathematical Physics · Physics 2012-12-17 Anthony J. Guttmann

Prudent walks are self-avoiding walks which cannot step towards an already occupied vertex. We introduce a new model of adsorbing prudent walks on the square lattice, which start on an impenetrable surface and accrue a fugacity $a$ with…

Mathematical Physics · Physics 2021-12-20 Nicholas R. Beaton , Gerasim K. Iliev

We investigate the existence and location of the surface phase known as the "Surface-Attached Globule" (SAG) conjectured previously to exist in lattice models of three-dimensional polymers when they are attached to a wall that has a short…

Soft Condensed Matter · Physics 2009-11-13 A. L. Owczarek , A. Rechnitzer , J. Krawczyk , T. Prellberg

The present paper is dedicated to the 2-dimensional Interacting Partially Directed Self Avoiding Walk constrained to remain in the upper-half plan and interacting with the horizontal axis. The model has been introduced in \cite{F90} to…

Probability · Mathematics 2020-09-22 Alexandre Legrand , Nicolas Pétrélis

We propose and study a model of polymer chains in a bilayer. Each chain is confined in one of the layers and polymer bonds on first neighbor edges in different layers interact. We also define and comment results for a model with…

Statistical Mechanics · Physics 2015-06-05 Pablo Serra , Jürgen F. Stilck

Interacting Growth Walks is a recently proposed stochastic model for studying the coil-globule transition of linear polymers. We propose a flat energy histogram version for Interacting Growth Walk. We demonstrate the algorithm on two…

Statistical Mechanics · Physics 2007-08-06 M. Ponmurugan , V. Sridhar , S. L. Narasimhan , K. P. N. Murthy

We study self-avoiding walks on the square lattice restricted to a square box of side $L$ weighted by a length fugacity without restriction of their end points. This models a confined polymer in dilute solution. The model admits a phase…

Statistical Mechanics · Physics 2022-07-22 C. J. Bradly , A. L. Owczarek

We present Monte Carlo simulations of a three-state lattice gas, half-filled with two types of particles which attract one another, irrespective of their identities. A bias drives the two particle species in opposite directions,…

Statistical Mechanics · Physics 2009-11-07 E. Lyman , B. Schmittmann

We consider a self-avoiding walk model of polymer adsorption where the adsorbed polymer can be desorbed by the application of a force. In this paper the force is applied normal to the surface at the last vertex of the walk. We prove that…

Mathematical Physics · Physics 2015-06-16 E. J. Janse van Rensburg , S. G. Whittington