English

Versatile approach to access the low temperature thermodynamics of lattice polymers and proteins

Soft Condensed Matter 2015-03-17 v1 Biomolecules

Abstract

We show that Wang-Landau sampling, combined with suitable Monte Carlo trial moves, provides a powerful method for both the ground state search and the determination of the density of states for the hydrophobic-polar (HP) protein model and the interacting self-avoiding walk (ISAW) model for homopolymers. We obtained accurate estimates of thermodynamic quantities for HP sequences with >100>100 monomers and for ISAWs up to >500>500 monomers. Our procedure possesses an intrinsic simplicity and overcomes the limitations inherent in more tailored approaches making it interesting for a broad range of protein and polymer models.

Keywords

Cite

@article{arxiv.1503.04433,
  title  = {Versatile approach to access the low temperature thermodynamics of lattice polymers and proteins},
  author = {Thomas Wüst and David P. Landau},
  journal= {arXiv preprint arXiv:1503.04433},
  year   = {2015}
}