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When modeling longitudinal biomedical data, often dimensionality reduction as well as dynamic modeling in the resulting latent representation is needed. This can be achieved by artificial neural networks for dimension reduction, and…

Machine Learning · Statistics 2023-12-01 Göran Köber , Raffael Kalisch , Lara Puhlmann , Andrea Chmitorz , Anita Schick , Harald Binder

In recent years, advanced sensors, intelligent automation, communication networks, and information technologies have been integrated into the electric grid to enhance its performance and efficiency. Integrating these new technologies has…

Systems and Control · Computer Science 2015-06-02 Reza Arghandeh , Alexandra von Meier , Laura Mehrmanesh , Lamine Mili

A wide body of work has applied the concept of critical slowing down to estimate the stability of different Earth system components. Most of them -- such as global vegetation -- are inherently non-stationary, for example due to strong…

Chaotic Dynamics · Physics 2026-04-28 Taylor Smith , Andreas Morr , Christof Schötz , Niklas Boers

Agricultural production is affected by climate extremes, which are increasing because of global warming. This motivates the need of a proper evaluation of the agricultural production systems resilience to enhance food security, market…

Populations and Evolution · Quantitative Biology 2019-02-08 Matteo Zampieri , Christof Weissteiner , Bruna Grizzetti , Andrea Toreti , Maurits van den Berg M. , Frank Dentener

Already 71 years ago Rosenblueth, Wiener, and Bigelow introduced the concept of the "behavioristic study of natural events" and proposed a classification of systems according to the quality of the behaviors they are able to exercise. In…

Other Computer Science · Computer Science 2016-11-18 Vincenzo De Florio

In this document, we develop a structured approach to the management of HPC resilience based on the concept of resilience-based design patterns. A design pattern is a general repeatable solution to a commonly occurring problem. We identify…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-12-30 Saurabh Hukerikar , Christian Engelmann

One unusual property of dynamic systems, whose state is characterized by a set of scalar dynamic variables satisfying a system of differential equations of a general form, is considered. This property is related to the behavior of equations…

General Relativity and Quantum Cosmology · Physics 2019-11-06 Sergey S. Kokarev

A novel model of biological organisms is advanced, treating an organism as a self-consistent system subject to a pathogen flux. The principal novelty of the model is that it describes not some parts, but a biological organism as a whole.…

Biological Physics · Physics 2015-05-13 V. I. Yukalov , D. Sornette , E. P. Yukalova , J. -Y. Henry , J. P. Cobb

We present a method to quantify a system's resilience capacity, i.e., the set of degradation magnitudes for which all functional requirements remain satisfied. These requirements come from human stakeholders (e.g., operators, planners) who…

Optimization and Control · Mathematics 2026-04-15 Ion Matei , Maksym Zhenirovskyy

The parameter space of dynamical systems arising in applications is often found to be high-dimensional and difficult to explore. We construct a fast algorithm to numerically analyze "quantitative features" of dynamical systems depending on…

Numerical Analysis · Mathematics 2008-07-15 Christian Kuehn

Reaction systems are discrete dynamical systems inspired by bio-chemical processes, whose dynamical behaviour is expressed by set-theoretic operations on finite sets. Reaction systems thus provide a description of bio-chemical phenomena…

Formal Languages and Automata Theory · Computer Science 2020-08-05 Alberto Dennunzio , Enrico Formenti , Luca Manzoni , Antonio E. Porreca

It is generally recognized that a distinguishing feature of life is its peculiar capability to avoid equilibration. The origin of this capability and its evolution along the timeline of abiogenesis is not yet understood. We propose to study…

Molecular Networks · Quantitative Biology 2016-10-13 Dmitry Yu. Zubarev , Leonardo A. Pachón

Approaches to understanding resilience from psychology and sociology emphasise individuals' agency but obscure systemic factors. Approaches to understanding resilience stemming from ecology emphasise system dynamics such as feedbacks but…

Populations and Evolution · Quantitative Biology 2019-11-07 Steven J. Lade , Brian H. Walker , L. Jamila Haider

Understanding the relationship between complexity and stability in large dynamical systems -- such as ecosystems -- remains a key open question in complexity theory which has inspired a rich body of work developed over more than fifty…

Populations and Evolution · Quantitative Biology 2021-07-14 Yvonne Krumbeck , Qian Yang , George W. A. Constable , Tim Rogers

A model of the dynamics of natural rotifer populations is described as a discrete nonlinear map depending on three parameters, which reflect characteristics of the population and environment. Model dynamics and their change by variation of…

Subcellular Processes · Quantitative Biology 2007-05-23 Faina S. Berezovskaya , Georgy P. Karev , Terry W. Snell

Nonlinear dynamical systems are complex and typically only simple systems can be analytically studied. In applications, these systems are usually defined with a set of tunable parameters and as the parameters are varied the system response…

Dynamical Systems · Mathematics 2025-05-05 Max M. Chumley , Firas A. Khasawneh

Dynamical systems modeling, particularly via systems of ordinary differential equations, has been used to effectively capture the temporal behavior of different biochemical components in signal transduction networks. Despite the recent…

Quantitative Methods · Quantitative Biology 2023-01-06 Nathaniel J. Linden , Boris Kramer , Padmini Rangamani

Microbial ecosystems are commonly modeled by fixed interactions between species in steady exponential growth states. However, microbes often modify their environments so strongly that they are forced out of the exponential state into…

Populations and Evolution · Quantitative Biology 2024-01-08 Avaneesh V. Narla , Terence Hwa , Arvind Murugan

This paper draws distinctions among various concepts related to tipping points, robustness, path dependence, and other properties of system dynamics. For each concept a formal definition is provided that utilizes Markov model…

Adaptation and Self-Organizing Systems · Physics 2008-11-06 Aaron L Bramson

Transition to turbulence is due to the instability of a laminar flow subject to a disturbance. This complicated problem can be explained using a new proposed energy gradient theory in our previous study. This theory is extended to the…

Chaotic Dynamics · Physics 2007-05-23 Hua-Shu Dou
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