Related papers: Conservation of polymer winding states: a combinat…
A quantitative theory of the buckling of a worm like chain based on a semi-classical approximation of the partition function is presented. The contribution of thermal fluctuations to the force-extension relation that allows to go beyond the…
A veritable zoo of different knots is seen in the ensemble of looped polymer chains, whether created computationally or observed in vitro. At short loop lengths, the spectrum of knots is dominated by the trivial knot (unknot). The…
We numerically examine the nonlinear rubber elasticity of topologically constrained polymer networks. We propose a simple and effective model based on Graessley and Pearson's topological model (GP model) for describing the topological…
Understanding the hydrodynamic alignment of colloidal rods in polymer solutions is pivotal for manufacturing structurally ordered materials. How polymer crowding influences the flow-induced alignment of suspended colloidal rods remains…
Ring polymers are prevalent in natural and engineered systems, including circular bacterial DNA, crown ethers for cation chelation, and mechanical nanoswitches. The morphology and dynamics of ring polymers are governed by the chemistry and…
In this work we derive certain topological theories of transverse vector fields whose amplitudes reproduce topological invariants involving the interactions among the trajectories of three and four random walks. This result is applied to…
We present the statistical-mechanical theory of semiflexible polymers based on the connection between the Kratky-Porod model and the quantum rigid rotator in an external homogeneous field, and treatment of the latter using the quantum…
Under high cylindrical confinement, segments of ring polymers can be localized along the long axis of the cylinder by introducing internal loops within the ring polymer. The emergent organization of the polymer segments occurs because of…
We address here the topological equivalence of knots through the so-called Reidemeister moves. These topology-conserving manipulations are recast into dynamical rules on the crossings of knot diagrams. This is presented in terms of a simple…
In this paper, we introduce and develop the circle embedding method. This method hinges essentially on a combinatorial-geometric structure which we choose to call circles of partition. We provide applications in the context of problems that…
A coarse-grained variational model is used to investigate the polymer dynamics of barrier crossing for a diverse set of two-state folding proteins. The model gives reliable folding rate predictions provided excluded volume terms that induce…
We consider one dimensional tight binding models on $\ell^2(\mathbb Z)$ whose spatial structure is encoded by a Sturmian sequence $(\xi_n)_n\in \{a,b\}^\mathbb Z$. An example is the Kohmoto Hamiltonian, which is given by the discrete…
Constitutive equations are derived for the time-dependent behavior of particle-reinforced elastomers at isothermal loading with finite strains. A rubbery polymer is modelled as a network of macromolecules bridged by junctions which can slip…
We consider an inextensible, semiflexible polymer or worm-like chain which is confined in the transverse direction by a parabolic potential and subject to a longitudinal force at the ends, so that the polymer is stretched out and…
The class of topological insulator materials is one of the frontier topics of condensed matter physics. The great success of this field is due to the conceptual breakthroughs in theories for topological electronic states and is strongly…
We consider the issue of the slice invariance of refined topological string amplitudes, which means that they are independent of the choice of the preferred direction of the refined topological vertex. We work out two examples. The first…
In this note, first the Recurrent Variational Approach (RVA) is introduced by using as example a non-trivial spin-model, the spin-1/2 antiferromagnetic two-leg-ladder. Then, a first application of this scheme to the electronic structure of…
For various polymers with different topological structures we numerically evaluate the mean-square radius of gyration and the hydrodynamic radius systematically through simulation. We call polymers with nontrivial topology topological…
In this work we consider the problem of finding the minimum-weight loop cover of an undirected graph. This combinatorial optimization problem is called 2-matching and can be seen as a relaxation of the traveling salesman problem since one…
We present a computer simulation study of the compact self-avoiding loops as regards their length and topological state. We use a Hamiltonian closed path on the cubic-shaped segment of a 3D cubic lattice as a model of a compact polymer. The…