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Standard concepts of nuclear physics explaining the systematics of ground state spins in nuclei by the presence of specific coherent terms in the nucleon-nucleon interaction were put in doubt by the observation that these systematics can be…
In dense stars such as collapsing cores of supernovae and neutron stars, nuclear "pasta" such as rod-like and slab-like nuclei are speculated to exist. However, whether or not they are actually formed in supernova cores is still unclear.…
Systems with long-range interactions when quenced into a metastable state near the pseudo-spinodal exhibit nucleation processes that are quite different from the classical nucleation seen near the coexistence curve. In systems with…
Rafts, or functional domains, are transient nano- or mesoscopic structures in the plasma membrane and are thought to be essential for many cellular processes such as signal transduction, adhesion, trafficking and lipid/protein sorting.…
The effects of the existence of exotic nuclear shapes at the bottom of the neutron star inner crust - nuclear `pasta' - on observational phenomena are estimated by comparing the limiting cases that those phases have a vanishing shear…
The two-particle wave function of neutrino and recoil nucleus is found as a solution of an initial value problem in the far zone for a time longer than the electron capture decay lifetime of a hydrogenlike ion. The neutrino-recoil…
The thermodynamics of strongly anisotropic crystalline surfaces is analogous to that of a binary mixture exhibiting phase separation. On a metastable planar surface, formation of stable orientations requires a nucleation process, in which…
Structure of cold and hot dense matter at subnuclear densities is investigated by quantum molecular dynamics (QMD) simulations. Obtained phase diagrams show that the density of the phase boundaries between the different nuclear structures…
We study the role the proton-electron gas interaction has on the formation of nuclear structures in neutron star crusts. Using a classical molecular dynamics model we study isospin symmetric and asymmetric matter at subsaturation densities…
In this chapter we discuss some possible physical pictures that describe the constitution of the inner crust of compact objects. Different relativistic models both with constant couplings and density dependent ones are used. We calculate…
The effects of particle roughness and short-ranged non-central forces on colloidal gels are studied using computer simulations in which particles experience a sinusoidal variation in energy as they rotate. The number of minima $n$ and…
Neutrinos play an important role in compact star astrophysics: neutrino-heating is one of the main ingredients in core-collapse supernovae, neutrino-matter interactions determine the composition of matter in binary neutron star mergers and…
Despite its importance in atmospheric science, much remains unknown about the microscopic mechanism of heterogeneous ice nucleation. In this work, we perform hybrid Monte Carlo simulations of the heterogeneous nucleation of ice on a range…
The intricate network of interactions observed in RNA three-dimensional structures is often described in terms of a multitude of geometrical properties, including helical parameters, base pairing/stacking, hydrogen bonding and backbone…
It is well known that the structural deformations (stressed states) of DNA molecule play a crucial role in its biological functions including gene expression. For instance, looping in DNA (often mediated by protein binding) is a crucial…
The Histone-like Nucleoid Structuring protein (H-NS) is a nucleoid-associated protein, which is involved in both gene regulation and DNA compaction. Although it is a key player in genome organization by forming bridges between DNA duplexes,…
Coulomb plasmas crystallize in a number of physical systems, such as dusty plasmas, neutron star crusts, and white dwarf cores. The crystal structure of the one component and binary plasma has received significant attention in the…
We present a model, based on symmetry and geometry, for proteins. Using elementary ideas from mathematics and physics, we derive the geometries of discrete helices and sheets. We postulate a compatible solvent-mediated emergent pairwise…
We review a molecular dynamics method for nucleon many-body systems called the quantum molecular dynamics (QMD) and our studies using this method. These studies address the structure and the dynamics of nuclear matter relevant to the…
The properties of nuclei embedded in an electron gas are studied within the relativistic mean-field approach. These studies are relevant for nuclear properties in astrophysical environments such as neutron-star crusts and supernova…