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The aim of our work is to study the effect of geometry variation on nucleation times and to address its role in the context of eukaryotic chemotaxis (i.e. the process which allows cells to identify and follow a gradient of chemical…
Biological cells can exchange messages through soluble molecules or membrane-bound receptors. In particular in the latter case, the interaction is usually located in specific regions of the interacting cells and may depend on or induce…
We explore the electrostatic bending response of a chain of charged particles confined on a finite helical filament. We analyze how the energy difference $\Delta E$ between the bent and the unbent helical chain scales with the length of the…
We demonstrate the necessity of using realistic stellar models taken from stellar evolution codes, as opposed to polytropes, for starting models in smoothed particle hydrodynamics calculations of collisions between main sequence stars.…
We study the rheology and distribution of interparticle contact lifetimes for gravity-driven, dense granular flows of non-cohesive particles down an inclined plane using large-scale, three dimensional, granular dynamics simulations. Rather…
[Abridged] High-resolution N-body simulations have recently shown that the structural properties of highly nonlinear cosmic structures, as e.g. their average concentration at a given mass, could be significantly modified in the presence of…
Using molecular dynamics simulations, we investigate the crystallization pathways of two exemplary systems that form the same complex crystal structure but differ fundamentally in the nature of their particle interactions. One system is…
We explore the effective long-range interaction of charged particles confined to a curved low-dimensional manifold using the example of a helical geometry. Opposite to the Coulomb interaction in free space the confined particles experience…
Nuclear effects in deep inelastic scattering at low$-x$ are phenomenologically described changing the typical dynamical and/or kinematical scales characterizing the free nucleon case. In a holographic approach, this rescaling is an…
We present an analysis of interacting E/S0 galaxies location on the Fundamental Plane. Using the NEMO package, we performed N-body simulations of close encounters and mergers between two spherical galaxies. We followed how structural and…
We study the equilibrium shapes of vesicles, with an in-plane nematic order, using a Monte-Carlo scheme and show that highly curved shapes, like tubes and discs, with a striking similarity to the structures engendered by certain curvature…
As a model of the longitudinal structure in heavy ion collisions, we simulate gravitational shock wave collisions in anti-de Sitter space in which each shock is composed of multiple constituents. We find that all constituents act…
Nucleosome core particle is a dynamic structure -- DNA may transiently peel off the histone octamer surface due to thermal fluctuations or the action of chromatin remodeling enzymes. Partial DNA unwrapping enables easier access of…
We conduct a multiparametric study of driven magnetic reconnection relevant to recent experiments on colliding magnetized laser produced plasmas using particle-in-cell simulations. Varying the background plasma density, plasma resistivity,…
Few years ago, Boltzmann neutrino transport led to a new and reliable generation of spherically symmetric models of stellar core collapse and postbounce evolution. After the failure to prove the principles of the supernova explosion…
Several physical systems in condensed matter have been modeled approximating their constituent particles as hard objects. The hard spheres model has been indeed one of the cornerstones of the computational and theoretical description in…
The wrapping of particles and vesicles by lipid bilayer membranes is a fundamental process in cellular transport and targeted drug delivery. Here, we investigate the wrapping behavior of nonspherical vesicles, such as ellipsoidal, prolate,…
We combine small angle scattering experiments and simulations to investigate the internal structure and interactions of composite Poly(N-isopropylacrylamide)-Poly(ethylene glycol) (PNIPAM-PEG) microgels. At low temperatures the…
We study weakly-bound deformed nuclei based on the coordinate-space Skyrme Hartree-Fock-Bogoliubov approach, in which a large box is employed for treating the continuum and surface diffuseness. Approaching the limit of core-halo deformation…
The behavior of identical particles interacting through the harmonic-repulsive pair potential has been studied in 3D using molecular dynamics simulations at a number of different densities. We found that at many densities, as the…