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This paper applies Algorithmic Information Theory to simple examples of replication processes to illustrate how replicating structures can generate and maintain order in a non equilibrium system. Variation in replicating structures enhances…

Adaptation and Self-Organizing Systems · Physics 2008-11-12 Sean D Devine

Designing mechanically efficient geometry for architectural structures like shells, towers, and bridges, is an expensive iterative process. Existing techniques for solving such inverse problems rely on traditional optimization methods,…

Computational Engineering, Finance, and Science · Computer Science 2025-03-18 Rafael Pastrana , Eder Medina , Isabel M. de Oliveira , Sigrid Adriaenssens , Ryan P. Adams

The study of networks has grown into a substantial interdisciplinary endeavour that encompasses myriad disciplines in the natural, social, and information sciences. Here we introduce a framework for constructing taxonomies of networks based…

Data Analysis, Statistics and Probability · Physics 2012-05-21 Jukka-Pekka Onnela , Daniel J. Fenn , Stephen Reid , Mason A. Porter , Peter J. Mucha , Mark D. Fricker , Nick S. Jones

Survival in groups of termites is known to be socially facilitated since individual longevity is increased together with the size of the group. Here we report on experimental evidence that survival as a function of group size in {\textit…

Biological Physics · Physics 2007-05-23 Og DeSouza , Octavio Miramontes

A robot modeled as a deterministic finite automaton has to build a structure from material available to it. The robot navigates in the infinite oriented grid $\mathbb{Z} \times \mathbb{Z}$. Some cells of the grid are full (contain a brick)…

Data Structures and Algorithms · Computer Science 2024-01-26 Jurek Czyzowicz , Dariusz Dereniowski , Andrzej Pelc

Understanding the architectural subtleties of ecological networks, believed to confer them enhanced stability and robustness, is a subject of outmost relevance. Mutualistic interactions have been profusely studied and their corresponding…

Populations and Evolution · Quantitative Biology 2015-02-19 Virginia Domínguez-García , Miguel A. Muñoz

Many biological systems collectively construct complex, adaptive, and functional architectures, where function emerges from bottom-up building processes rather than top-down planning or centralized control. However, general strategies for…

Soft Condensed Matter · Physics 2026-04-15 Andrew Slezak , Varda F. Hagh

Many cellular patterns exhibit a reaction-diffusion component, suggesting that Turing instability may contribute to pattern formation. However, biological gene-regulatory pathways are more complex than simple Turing activator-inhibitor…

Molecular Networks · Quantitative Biology 2024-12-05 Hazlam S. Ahmad Shaberi , Aibek Kappassov , Antonio Matas-Gil , Robert G. Endres

A phylogenetic network is a directed acyclic graph that visualises an evolutionary history containing so-called reticulations such as recombinations, hybridisations or lateral gene transfers. Here we consider the construction of a simplest…

Populations and Evolution · Quantitative Biology 2008-05-16 Leo van Iersel , Steven Kelk

Interacting individuals in complex systems often give rise to coherent motion exhibiting coordinated global structures. Such phenomena are ubiquitously observed in nature, from cell migration, bacterial swarms, animal and insect groups, and…

Neural and Evolutionary Computing · Computer Science 2024-07-17 Dongjo Kim , Jeongsu Lee , Ho-Young Kim

The community structure of a complex network can be determined by finding the partitioning of its nodes that maximizes modularity. Many of the proposed algorithms for doing this work by recursively bisecting the network. We show that this…

Computers and Society · Computer Science 2015-05-13 Yudong Sun , Bogdan Danila , Kresimir Josic , Kevin E. Bassler

Efficiency in passage times is an important issue in designing networks, such as transportation or computer networks. The small-world networks have structures that yield high efficiency, while keeping the network highly clustered. We show…

Disordered Systems and Neural Networks · Physics 2009-11-07 Takashi Nishikawa , Adilson E. Motter , Ying-Cheng Lai , Frank C. Hoppensteadt

We extend the study of a model of competitive cluster growth in an active medium to a basis of networks; this is done by adding nonlocal connections with probability $p$ to sites on a regular lattice, thus enabling one to interpolate…

Statistical Mechanics · Physics 2010-12-10 N. Nirmal Thyagu , Anita Mehta

Building structures can allow a robot to surmount large obstacles, expanding the set of areas it can reach. This paper presents a planning algorithm to automatically determine what structures a construction-capable robot must build in order…

Robotics · Computer Science 2018-12-12 Tarik Tosun , Cynthia Sung , Colin McCloskey , Mark Yim

Networks are widely used in the biological, physical, and social sciences as a concise mathematical representation of the topology of systems of interacting components. Understanding the structure of these networks is one of the outstanding…

Data Analysis, Statistics and Probability · Physics 2007-06-21 M. E. J. Newman , E. A. Leicht

A number of recent studies have focused on the statistical properties of networked systems such as social networks and the World-Wide Web. Researchers have concentrated particularly on a few properties which seem to be common to many…

Statistical Mechanics · Physics 2009-11-07 Michelle Girvan , M. E. J. Newman

Real-world networks such as the Internet and WWW have many common traits. Until now, hundreds of models were proposed to characterize these traits for understanding the networks. Because different models used very different mechanisms, it…

Social and Information Networks · Computer Science 2014-09-02 Bojin Zheng , Hongrun Wu , Li Kuang , Jun Qin , Wenhua Du , Jianmin Wang , Deyi Li

Food webs, networks of feeding relationships among organisms, provide fundamental insights into mechanisms that determine ecosystem stability and persistence. Despite long-standing interest in the compartmental structure of food webs, past…

Populations and Evolution · Quantitative Biology 2013-06-18 Edward B. Baskerville , Andy P. Dobson , Trevor Bedford , Stefano Allesina , Mercedes Pascual

Volumetric brain reconstructions provide an unprecedented opportunity to gain insights into the complex connectivity patterns of neurons in an increasing number of organisms. Here, we model and quantify the complexity of the resulting…

Neurons and Cognition · Quantitative Biology 2024-05-13 Anastasiya Salova , István A. Kovács

Evolutionary deep intelligence has recently shown great promise for producing small, powerful deep neural network models via the synthesis of increasingly efficient architectures over successive generations. Despite recent research showing…

Computer Vision and Pattern Recognition · Computer Science 2019-04-23 Audrey Chung , Paul Fieguth , Alexander Wong