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We introduce evolving networks where new vertices preferentially connect to the more central parts of a network. This makes such networks compact. Finite networks grown under the preferential compactness mechanism have complex…

Disordered Systems and Neural Networks · Physics 2007-05-23 M. J. Alava , S. N. Dorogovtsev

Matrices are two-dimensional data structures allowing one to conceptually organize information. For example, adjacency matrices are useful to store the links of a network; correlation matrices are simple ways to arrange gene co-expression…

Disordered Systems and Neural Networks · Physics 2022-09-29 Flaviano Morone

Symmetry principles play an important role in geometry, and physics, allowing for the reduction of complicated systems to simpler, more comprehensible models that preserve the system's features of interest. Biological systems are often…

Cell Behavior · Quantitative Biology 2025-02-26 Luis A. Álvarez-García , Wolfram Liebermeister , Ian Leifer , Hernán A. Makse

Deep neural networks (DNNs) are powerful machine learning models and have succeeded in various artificial intelligence tasks. Although various architectures and modules for the DNNs have been proposed, selecting and designing the…

Neural and Evolutionary Computing · Computer Science 2018-01-24 Shinichi Shirakawa , Yasushi Iwata , Youhei Akimoto

Many networks including social networks, computer networks, and biological networks are found to divide naturally into communities of densely connected individuals. Finding community structure is one of fundamental problems in network…

Social and Information Networks · Computer Science 2011-08-22 Thang N. Dinh , My T. Thai

A structural optimization scheme for a single-layer nonnegative adaptive tensor tree (NATT) that models a target probability distribution is proposed as an alternative paradigm for generative modeling. The NATT scheme, by construction,…

Machine Learning · Computer Science 2025-07-02 Katsuya O. Akamatsu , Kenji Harada , Tsuyoshi Okubo , Naoki Kawashima

Just as a herd of animals relies on its robust social structure to survive in the wild, similarly robustness is a crucial characteristic for the survival of a complex network under attack. The capacity to measure robustness in complex…

Networking and Internet Architecture · Computer Science 2008-11-27 Ali Sydney , Caterina Scoglio , Phillip Schumm , Robert Kooij

Network structures, consisting of nodes and edges, have applications in almost all subjects. A set of nodes is called a community if the nodes have strong interrelations. Industries (including cell phone carriers and online social media…

Social and Information Networks · Computer Science 2019-02-13 Haoye Lu , Amiya Nayak

Constraints placed upon the phenotypes of organisms result from their interactions with the environment. Over evolutionary timescales, these constraints feed back onto smaller molecular subnetworks comprising the organism. The evolution of…

Molecular Networks · Quantitative Biology 2015-06-10 Cameron Smith , Ximo Pechuan , Raymond S. Puzio , Daniel Biro , Aviv Bergman

Modern Machine learning techniques take advantage of the exponentially rising calculation power in new generation processor units. Thus, the number of parameters which are trained to resolve complex tasks was highly increased over the last…

Neural and Evolutionary Computing · Computer Science 2020-05-21 Richard C. Gerum , André Erpenbeck , Patrick Krauss , Achim Schilling

Navigating networked robot swarms often requires knowing where to go, sensing the environment, and path-planning based on the destination and barriers in the environment. Such a process is computationally intensive. Moreover, as the network…

Neural and Evolutionary Computing · Computer Science 2014-07-02 Grace Gao

We numerically investigate that optimal robust onion-like networks can emerge even with the constraint of surface growth in supposing a spatially embedded transportation or communication system. To be onion-like, moderately long links are…

Physics and Society · Physics 2019-11-11 Yukio Hayashi , Yuki Tanaka

We present a new layout algorithm for complex networks that combines a multi-scale approach for community detection with a standard force-directed design. Since community detection is computationally cheap, we can exploit the multi-scale…

Physics and Society · Physics 2015-03-13 Oliver Dürr , Arnd Brandenburg

The rapid progress of Artificial Intelligence research came with the development of increasingly complex deep learning models, leading to growing challenges in terms of computational complexity, energy efficiency and interpretability. In…

Machine Learning · Computer Science 2023-06-28 Yuanrong Wang , Antonio Briola , Tomaso Aste

Despite recent interest in reconstructing neuronal networks, complete wiring diagrams on the level of individual synapses remain scarce and the insights into function they can provide remain unclear. Even for Caenorhabditis elegans, whose…

Neurons and Cognition · Quantitative Biology 2011-02-07 Lav R. Varshney , Beth L. Chen , Eric Paniagua , David H. Hall , Dmitri B. Chklovskii

We propose a novel method to find the community structure in complex networks based on an extremal optimization of the value of modularity. The method outperforms the optimal modularity found by the existing algorithms in the literature. We…

Disordered Systems and Neural Networks · Physics 2009-11-11 J. Duch , A. Arenas

The influence of deep learning is continuously expanding across different domains, and its new applications are ubiquitous. The question of neural network design thus increases in importance, as traditional empirical approaches are reaching…

Neural and Evolutionary Computing · Computer Science 2021-01-29 Anton Muravev , Jenni Raitoharju , Moncef Gabbouj

The analysis of complex networks permeates all sciences, from biology to sociology. A fundamental, unsolved problem is how to characterize the community structure of a network. Here, using both standard and novel benchmarks, we show that…

Molecular Networks · Quantitative Biology 2012-12-24 Rodrigo Aldecoa , Ignacio Marín

Structural network embedding is a crucial step in enabling effective downstream tasks for complex systems that aims to project a network into a lower-dimensional space while preserving similarities among nodes. We introduce a simple and…

Social and Information Networks · Computer Science 2024-12-23 Giuseppe Squillace , Mirco Tribastone , Max Tschaikowski , Andrea Vandin

Complex networks are all around us, and they can be generated by simple mechanisms. Understanding what kinds of networks can be produced by following simple rules is therefore of great importance. We investigate this issue by studying the…

Social and Information Networks · Computer Science 2013-01-22 Richard Southwell , Jianwei Huang , Chris Cannings
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