Related papers: On the maximum quartet distance between phylogenet…
In a geometric network G = (S, E), the graph distance between two vertices u, v in S is the length of the shortest path in G connecting u to v. The dilation of G is the maximum factor by which the graph distance of a pair of vertices…
We prove, that every connected graph with $s$ vertices of degree 3 and $t$ vertices of degree at least~4 has a spanning tree with at least ${2\over 5}t +{1\over 5}s+\alpha$ leaves, where $\alpha \ge {8\over 5}$. Moreover, $\alpha \ge 2$ for…
The Wiener index is maximized over the set of trees with the given vertex weight and degree sequences. This model covers the traditional "unweighed" Wiener index, the terminal Wiener index, and the vertex distance index. It is shown that…
A vertex subset of a graph is called a distance-$k$ independent set if the distance between any two of its distinct vertices is at least $k + 1$. For all $n,k \geq 1$, we determine the minimum possible number of inclusion-wise maximal…
The path-difference metric is one of the oldest and most popular distances for the comparison of phylogenetic trees, but its statistical properties are still quite unknown. In this paper we compute the expected value under the Yule model of…
A phylogenetic tree shows the evolutionary relationships among species. Internal nodes of the tree represent speciation events and leaf nodes correspond to species. A goal of phylogenetics is to combine such trees into larger trees, called…
We study the problem of computing the triplet distance between two rooted unordered trees with $n$ labeled leafs. Introduced by Dobson 1975, the triplet distance is the number of leaf triples that induce different topologies in the two…
For $d\ge 2$ and an odd prime power $q$, consider the vector space $\mathbb{F}_q^d$ over the finite field $\mathbb{F}_q$, where the distance between two points $(x_1,\ldots,x_d)$ and $(y_1,\ldots,y_d)$ is defined as $\sum_{i=1}^d…
A rearrangement operation makes a small graph-theoretical change to a phylogenetic network to transform it into another one. For unrooted phylogenetic trees and networks, popular rearrangement operations are tree bisection and reconnection…
In this paper we show how to find nearly optimal embeddings of large trees in several natural classes of graphs. The size of the tree T can be as large as a constant fraction of the size of the graph G, and the maximum degree of T can be…
Let $G$ be a connected graph with vertex set $V(G)$, and denote by $d_G(u,v)$ the distance from $u$ to $v$ in $G$, for any $u,v \in V(G)$. The average distance of an $n$-vertex connected graph $G$, denoted by $\mu(G)$, is defined to be the…
The maximum parsimony distance $d_{\textrm{MP}}(T_1,T_2)$ and the bounded-state maximum parsimony distance $d_{\textrm{MP}}^t(T_1,T_2)$ measure the difference between two phylogenetic trees $T_1,T_2$ in terms of the maximum difference…
The maximum agreement forest (MAF) problem in phylogenetics takes as input a set t >= 2 of binary phylogenetic trees T on the same set of taxa X. It asks for a partition of X into the smallest number of blocks such that the subtrees induced…
In a recent article [5], the authors claim that the distance between the b-chromatic index of a tree and a known upper bound is at most 1. At the same time, in [7] the authors claim to be able to construct a tree where this difference is…
A metric phylogenetic tree relating a collection of taxa induces weighted rooted triples and weighted quartets for all subsets of three and four taxa, respectively. New intertaxon distances are defined that can be calculated from these…
We prove that every tree of maximum degree $\Delta$ with $\ell$ leaves contains paths between leaves of at least $\log_{\Delta-1}((\Delta-2)\ell)$ distinct lengths. This settles in a strong form a conjecture of Narins, Pokrovskiy and…
There are several tools available to infer phylogenetic trees, which depict the evolutionary relationships among biological entities such as viral and bacterial strains in infectious outbreaks, or cancerous cells in tumor progression trees.…
Counting the number of spanning trees in specific classes of graphs has attracted increasing attention in recent years. In this note, we present unified proofs and generalizations of several results obtained in the 2020s. The main method is…
Let $G=(V_G, E_G)$ be a simple connected graph. The eccentric distance sum of $G$ is defined as $\xi^{d}(G) = \sum_{v\in V_G}\varepsilon_{G}(v)D_{G}(v)$, where $\varepsilon_G(v)$ is the eccentricity of the vertex $v$ and $D_G(v) =…
Trees with labelled leaves and with all other vertices of degree three play an important role in systematic biology and other areas of classification. A classical combinatorial result ensures that such trees can be uniquely reconstructed…