Related papers: On the maximum quartet distance between phylogenet…
A chief problem in phylogenetics and database theory is the computation of a maximum consistent tree from a set of rooted or unrooted trees. A standard input are triplets, rooted binary trees on three leaves, or quartets, unrooted binary…
We give algorithms to compute the Fr\'echet distance of trees and graphs with bounded tree width. Our algorithms run in $O(n^2)$ time for trees of bounded degree, and $O(n^2\sqrt{n \log n})$ time for trees of arbitrary degree. For graphs of…
It is an open question whether there exists a polynomial-time algorithm for computing the rotation distances between pairs of extended ordered binary trees. The problem of computing the rotation distance between an arbitrary pair of trees,…
We determine the maximum distance between any two of the center, centroid, and subtree core among trees with a given order. Corresponding results are obtained for trees with given maximum degree and also for trees with given diameter. The…
Let $T$ be an $n$-node tree of maximum degree 4, and let $P$ be a set of $n$ points in the plane with no two points on the same horizontal or vertical line. It is an open question whether $T$ always has a planar drawing on $P$ such that…
We bound the mean distance in a connected graph which is not a tree in function of its order $n$ and its girth $g$. On one hand, we show that mean distance is at most $\frac{n+1}{3}-\frac{g(g^2-4)}{12n(n-1)}$ if $g$ is even and at most…
Phylogenetic trees are frequently used to model evolution. Such trees are typically reconstructed from data like DNA, RNA, or protein alignments using methods based on criteria like maximum parsimony (amongst others). Maximum parsimony has…
The minimal number of rooted subtree prune and regraft (rSPR) operations needed to transform one phylogenetic tree into another one induces a metric on phylogenetic trees - the rSPR-distance. The rSPR-distance between two phylogenetic trees…
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to…
We apply classical quartet techniques to the problem of phylogenetic decisiveness and find a value $k$ such that all collections of at least $k$ quartets are decisive. Moreover, we prove that this bound is optimal and give a lower-bound on…
We propose the following conjecture: For every fixed $\alpha\in [0,\frac 13)$, each graph of minimum degree at least $(1+\alpha)\frac k2$ and maximum degree at least $2(1-\alpha)k$ contains each tree with $k$ edges as a subgraph. Our main…
A fundamental problem in network science is the normalization of the topological or physical distance between vertices, that requires understanding the range of variation of the unnormalized distances. Here we investigate the limits of the…
In this article we prove that the distance $d_{\mathrm{MP}}(T_1,T_2) = k$ between two unrooted binary phylogenetic trees $T_1, T_2$ on the same set of taxa can be defined by a character that is convex on one of $T_1, T_2$ and which has at…
As well known the rotation distance D(S,T) between two binary trees S, T of n vertices is the minimum number of rotations of pairs of vertices to transform S into T. We introduce the new operation of chain rotation on a tree, involving two…
We define a new balance index for rooted phylogenetic trees based on the symmetry of the evolutive history of every set of 4 leaves. This index makes sense for multifurcating trees and it can be computed in time linear in the number of…
A cactus is a connected graph in which any two cycles have at most one common vertex. We determine the unique graph that maximizes the distance spectral radius over all cacti with fixed numbers of vertices and cycles, and thus prove a…
We confirm the following conjecture which has been proposed in [{\em Linear Algebra and its Applications}, {\bf 436} (2012), No. 5, 1425-1435.]: $$ 0.945\approx\displaystyle\lim_{n\longrightarrow…
The Erd\H os unit distance conjecture in the plane says that the number of pairs of points from a point set of size $n$ separated by a fixed (Euclidean) distance is $\leq C_{\epsilon} n^{1+\epsilon}$ for any $\epsilon>0$. The best known…
We prove polynomial upper and lower bounds on the expected size of the maximum agreement subtree of two random binary phylogenetic trees under both the uniform distribution and Yule-Harding distribution. This positively answers a question…
We prove that for any pair of constants $\epsilon>0$ and $\Delta$ and for $n$ sufficiently large, every family of trees of orders at most $n$, maximum degrees at most $\Delta$, and with at most $\binom{n}{2}$ edges in total packs into…