Related papers: On the maximum quartet distance between phylogenet…

Splay trees are a simple and efficient dynamic data structure, invented by Sleator and Tarjan. The basic primitive for transforming a binary tree in this scheme is a rotation. Sleator, Tarjan, and Thurston proved that the maximum rotation…

The purpose of this paper is to establish an upper bound on the distance between two pants decompositions in the pants complex for a closed surface of genus g >= 2. This is done by use of graph theory. First distance is found in the pants…

A merge tree is a fundamental topological structure used to capture the sub-level set (and similarly, super-level set) topology in scalar data analysis. The interleaving distance is a theoretically sound, stable metric for comparing merge…

We present new and improved fixed-parameter algorithms for computing maximum agreement forests (MAFs) of pairs of rooted binary phylogenetic trees. The size of such a forest for two trees corresponds to their subtree prune-and-regraft…

Phylogenetic networks are used to represent the evolutionary history of species. Recently, the new class of orchard networks was introduced, which were later shown to be interpretable as trees with additional horizontal arcs. This makes the…

A classical result, fundamental to evolutionary biology, states that an edge-weighted tree $T$ with leaf set $X$, positive edge weights, and no vertices of degree 2 can be uniquely reconstructed from the set of leaf-to-leaf distances…

Phylogenetic trees are leaf-labelled trees used to model the evolution of species. Here we explore the practical impact of kernelization (i.e. data reduction) on the NP-hard problem of computing the TBR distance between two unrooted binary…

The subtree prune-and-regraft (SPR) distance metric is a fundamental way of comparing evolutionary trees. It has wide-ranging applications, such as to study lateral genetic transfer, viral recombination, and Markov chain Monte Carlo…

$\newcommand{\Max}{\mathrm{Max4PC}}$ The Four point condition (4PC henceforth) is a well known condition characterising distances in trees $T$. Let $w,x,y,z$ be four vertices in $T$ and let $d_{x,y}$ denote the distance between vertices…

We investigate the structure of trees that have minimal algebraic connectivity among all trees with a given degree sequence. We show that such trees are caterpillars and that the vertex degrees are non-decreasing on every path on…

Barret, Evans, and Francis conjectured that if $G$ is the straight linear 3-tree with $n$ vertices and $H$ is the straight linear 3-tree with $n+1$ vertices then \[\lim_{n\rightarrow \infty} r_{H} (1, n+1) - r_G(1,n) = \frac{1}{14},\] where…

Recently it was shown that, if the subtree and chain reduction rules have been applied exhaustively to two unrooted phylogenetic trees, the reduced trees will have at most 15k-9 taxa where k is the TBR (Tree Bisection and Reconnection)…

For an undirected tree with $n$ edges labelled by single letters, we consider its substrings, which are labels of the simple paths between pairs of nodes. We prove that there are $O(n^{1.5})$ different palindromic substrings. This solves an…

Let $L(n,d)$ denote the minimum possible number of leaves in a tree of order $n$ and diameter $d.$ In 1975 Lesniak gave the lower bound $B(n,d)=\lceil 2(n-1)/d\rceil$ for $L(n,d).$ When $d$ is even, $B(n,d)=L(n,d).$ But when $d$ is odd,…

We compare the phylogenetic tensors for various trees and networks for two, three and four taxa. If the probability spaces between one tree or network and another are not identical then there will be phylogenetic tensors that could have…

The search for similarity and dissimilarity measures on phylogenetic trees has been motivated by the computation of consensus trees, the search by similarity in phylogenetic databases, and the assessment of clustering results in…

We prove the Erd\H os--S\'os conjecture for trees with bounded maximum degree and large dense host graphs. As a corollary, we obtain an upper bound on the multicolour Ramsey number of large trees whose maximum degree is bounded by a…

Let T be a weighted tree with n numbered leaves and let D be its distance matrix, so D(i,j) is the distance between the leaves i and j. If m is an integer between 2 and n, we prove a tropical formula to compute the m-dissimilarity map of T…

The relation between the Wiener index $W(G)$ and the eccentricity $\varepsilon(G)$ of a graph $G$ is studied. Lower and upper bounds on $W(G)$ in terms of $\varepsilon(G)$ are proved and extremal graphs characterized. A Nordhaus-Gaddum type…

Let $k\geq2$ be an integer. A tree $T$ is called a $k$-tree if $d_T(v)\leq k$ for each $v\in V(T)$, that is, the maximum degree of a $k$-tree is at most $k$. Let $\lambda_1(D(G))$ denote the distance spectral radius in $G$, where $D(G)$…