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In synthetic biology, gene regulatory circuits are often constructed by combining smaller circuit components. Connections between components are achieved by transcription factors acting on promoters. If the individual components behave as…

Molecular Networks · Quantitative Biology 2011-02-15 Kyung Hyuk Kim , Herbert M. Sauro

We explain the Fano peak (an asymmetric resonance peak) as an interference effect involving resonant states. We reveal that there are three types of Fano asymmetry according to their origins: the interference between a resonant state and an…

Mesoscale and Nanoscale Physics · Physics 2015-04-08 Keita Sasada , Naomichi Hatano , Gonzalo Ordonez

The quantum Zeno effect -- suppression of decay by frequent measurements -- was believed to occur only when the response of the detector is so quick that the initial tiny deviation from the exponential decay law is detectable. However, we…

Quantum Physics · Physics 2009-11-10 Kazuki Koshino , Akira Shimizu

The efficiency of any heat engine, defined as the ratio of average work output to heat input, is bounded by Carnot's celebrated result. However, this measure is insufficient to characterize the properties of miniaturized heat engines…

Fluctuations may govern the fate of an interacting particle system even on the mean-field level. This is demonstrated via a three species cyclic trapping reaction with a large, yet finite number of particles, where the final number of…

Statistical Mechanics · Physics 2007-05-23 E. Ben-Naim , P. L. Krapivsky

For finite-time quantum Otto heat engine with working fluid consisting of either a (i) qubit or (ii) a harmonic oscillator, we show that the relative fluctuation of output work is always greater than the corresponding relative fluctuation…

Statistical Mechanics · Physics 2021-06-30 Sushant Saryal , Bijay Kumar Agarwalla

The discrimination between non-orthogonal quantum states plays a pivotal role in quantum information processing and quantum technology. Strategies that minimize the error probability are of particular importance, but they are only known for…

Quantum Physics · Physics 2025-05-16 Georgios M. Nikolopoulos

According to the quantum Zeno effect, the frequent observations of a system can dramatically slow down its dynamical evolution. We show that the Zeno dynamics is the result of projective measurements among quantum states which are…

Quantum Physics · Physics 2010-02-19 Augusto Smerzi

We derive a general lower bound on distributions of entropy production in interacting active matter systems. The bound is tight in the limit that interparticle correlations are small and short-ranged, which we explore in four canonical…

Statistical Mechanics · Physics 2021-02-03 Trevor GrandPre , Katherine Klymko , Kranthi K. Mandadapu , David T. Limmer

The Fano effect or Fano resonance with a characteristically asymmetric line shape originates from quantum interference between direct and indirect transition pathways in continuum-bound coupled systems, and is a ubiquitous phenomenon in…

Quantum Physics · Physics 2019-02-13 Yuqing Li , Guosheng Feng , Jizhou Wu , Jie Ma , Bimalendu Deb , Arpita Pal , Liantuan Xiao , Suotang Jia

The laws of thermodynamics apply to biophysical systems on the nanoscale as described by the framework of stochastic thermodynamics. This theory provides universal, exact relations for quantities like work, which have been verified in…

Statistical Mechanics · Physics 2024-09-26 Julius Degünther , Jann van der Meer , Udo Seifert

We hypothesize that the binding interactions among the components of bound systems and the background fields, sometimes known as virtual particle exchange, affect the state of the systems as do typical scattering interactions. Then with the…

Quantum Physics · Physics 2025-10-07 Peter W. Bryant

Quantum interference effects in inter-conversion between cold atoms and diatomic molecules are analysed. Within the framework of Fano's theory, continuum-bound anisotropic dressed state formalism of atom-molecule quantum dynamics is…

Atomic Physics · Physics 2013-01-22 B. Deb , A. Rakshit , J. Hazra , D. Chakraborty

We show for Markov diffusion processes that the quadratic entropic bound, recently derived for the rate functions of nonequilibrium currents, can be seen as being produced by an effective process that creates current fluctuations in a…

Statistical Mechanics · Physics 2023-03-30 Cesare Nardini , Hugo Touchette

Fluctuation dynamics of an experimentally measured observable offer a primary signal for nonequilibrium systems, along with dynamics of the mean. While universal speed limits for the mean have actively been studied recently, constraints for…

Statistical Mechanics · Physics 2024-11-08 Ryusuke Hamazaki

A finite-time fluctuation theorem for the diffusion-influenced surface reaction A <=> B is investigated for spherical and Janus catalytic particles. The finite-time rates and thermodynamic force are analytically calculated by solving…

Statistical Mechanics · Physics 2018-12-24 Pierre Gaspard , Patrick Grosfils , Mu-Jie Huang , Raymond Kapral

A quantum magnetic impurity of spin $S$ at the edge of a two-dimensional time reversal invariant topological insulator may give rise to backscattering. We study here the shot noise associated with the backscattering current for arbitrary…

Mesoscale and Nanoscale Physics · Physics 2019-08-09 Pavel D. Kurilovich , Vladislav D. Kurilovich , Igor S. Burmistrov , Yuval Gefen , Moshe Goldstein

We propose a Markovian quantum master equation that can describe the Fano effect directly, by assuming a standard cavity quantum electrodynamics system. The framework allows us to generalize the Fano formula, applicable over the weak and…

Quantum Physics · Physics 2021-01-18 Makoto Yamaguchi , Alexey Lyasota , Tatsuro Yuge

A finite-time fluctuation theorem is proved for the diffusion-influenced surface reaction A<->B in a domain with any geometry where the species A and B undergo diffusive transport between the reservoir and the catalytic surface. A…

Statistical Mechanics · Physics 2018-12-24 Pierre Gaspard , Raymond Kapral

We propose a machine learning approach based on artificial neural network to gain faster insights on the role of geometric contributions to the nonequilibrium fluctuations of an adiabatically temperature-driven quantum heat engine coupled…

Quantum Physics · Physics 2019-02-06 Sajal Kumar Giri , Himangshu Prabal Goswami