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Spatial reaction-diffusion models have been employed to describe many emergent phenomena in biological systems. The modelling technique most commonly adopted in the literature implements systems of partial differential equations (PDEs),…

Quantitative Methods · Quantitative Biology 2015-10-05 Christian A. Yates , Mark B. Flegg

This paper deals with the large-time analysis of a PDE system modelling contact with adhesion, in the case when thermal effects are taken into account. The phenomenon of adhesive contact is described in terms of phase transitions for a…

Analysis of PDEs · Mathematics 2009-09-15 Elena Bonetti , Giovanna Bonfanti , Riccarda Rossi

This work derives sufficient conditions for the permanence and ergodicity of a stochastic predator-prey model with Beddington-DeAngelis functional response. The conditions obtained in fact are very close to the necessary conditions. Both…

Probability · Mathematics 2016-04-04 Nguyen Huu Du , Hai Dang Nguyen , George Yin

We introduce mesoscopic and macroscopic model equations of chemotaxis with anomalous subdiffusion for modelling chemically directed transport of biological organisms in changing chemical environments with diffusion hindered by traps or…

Dynamical Systems · Mathematics 2012-12-03 T. A. M. Langlands , B. I. Henry

Chemotaxis and reactions are fundamental processes in biology, often intricately intertwined. Chemotaxis, in particular, can be crucial in maintaining and accelerating a reaction. In this work, we extend the investigation initiated by…

Analysis of PDEs · Mathematics 2024-12-31 Crystianne L. De Andrade , Alexander A. Kiselev

Macroscopic changes of group behavior of eusocial insects are studied from the viewpoint of non-equilibrium phase transitions. Recent combined study of experiments and mathematical modeling by the group led by the third author suggests that…

Statistical Mechanics · Physics 2025-02-14 Saori Morimoto , Makoto Katori , Hiraku Nishimori

A chemotaxis-diffusion-convection coupling system for describing a form of buoyant convection in which the fluid develops convection cells and plume patterns will be investigated numerically in this study. Based on the two-dimensional…

Fluid Dynamics · Physics 2015-02-19 Yannick Deleuze , Chen-Yu Chiang , Marc Thiriet , Tony W. H. Sheu

The activation-polymerization-epimerization-depolymerization (APED) model of Plasson et al. has recently been proposed as a mechanism for the evolution of homochirality on prebiotic Earth. The dynamics of the APED model in two-dimensional…

Populations and Evolution · Quantitative Biology 2015-05-13 Marcelo Gleiser , Sara Imari Walker

Partial differential equation (PDE) models for infectious diseases, while less common than their ordinary differential equation (ODE) counterparts, have found successful applications for many years. Such models are typically of…

Populations and Evolution · Quantitative Biology 2026-01-27 Alex Viguerie , Malú Grave , Alvaro L. G. A. Coutinho , Alessandro Veneziani , Thomas J. R. Hughes

Behavioral heterogeneities in animals, also known as syndromes, play a crucial role in understanding how natural populations flexibly adapt to environmental changes. In ant species like \textit{Aphaenogaster senilis}, two key roles in…

Statistical Mechanics · Physics 2025-03-24 Daniel Marris , Pol Fernández-López , Frederic Bartumeus , Luca Giuggioli

Multiple sequence alignment is a key process in today's biology, and finding a relevant alignment of several sequences is much more challenging than just optimizing some improbable evaluation functions. Our approach for addressing multiple…

Quantitative Methods · Quantitative Biology 2008-12-18 Frédéric Guinand , Yoann Pigné

We develop the hydrodynamic theory of dry, polar ordered, active matter (``flocking") with autochemotaxis; i.e., self-propelled entities moving in the same direction, each emitting a substance which attracts the others (e.g., ants). We find…

Soft Condensed Matter · Physics 2024-01-22 Maxx Miller , John Toner

Artificial ecosystems provide an additional experimental tool to support laboratory work, field work, and theoretical development in competitive exclusion research. A novel application of a spatiotemporal agent based model is presented…

Populations and Evolution · Quantitative Biology 2023-06-01 John C. Stevenson

We prove existence and Sobolev regularity of solutions of a nonlinear system of degenerate-parabolic PDEs with self- and cross-diffusion, transport/confinement and nonlocal interaction terms. The macroscopic system of PDEs is formally…

Analysis of PDEs · Mathematics 2021-06-01 Luca Alasio , Maria Bruna , Simone Fagioli , Simon Schulz

Understanding the asymptotic behavior of reaction-diffusion (RD) systems is crucial for modeling processes ranging from species coexistence in ecology to biochemical interactions within cells. In this work, we analyze RD systems in which…

Dynamical Systems · Mathematics 2025-02-18 Carlos Barajas , Jean-Jacques Slotine , Domitilla Del Vecchio

This paper addresses an open inverse problem at the interface of mathematical analysis and spatial ecology: the unique identification of unknown spatial anomalies -- interpreted as zones of habitat degradation -- and their associated…

Analysis of PDEs · Mathematics 2025-12-30 Yuhan Li , Hongyu Liu , Catharine W. K. Lo

The signaling apparatus mediating bacterial chemotaxis can adapt to a wide range of persistent external stimuli. In many cases, the bacterial activity returns to its pre-stimulus level exactly and this "perfect adaptability" is robust…

Biological Physics · Physics 2017-10-16 Bernardo A. Mello , Yuhai Tu

This paper studies a chemotaxis system where cells move in response to a chemical signal within a confined habitat. The model includes external source terms that combine local and nonlocal growth with dampening effects. The main focus is on…

Analysis of PDEs · Mathematics 2025-11-11 Rafael Diaz Fuentes , Fatma Gamze Duzgun , Silvia Frassu , Giuseppe Viglialoro

The networks of predator-prey interactions in ecological systems are remarkably complex, but nevertheless surprisingly stable in terms of long term persistence of the system as a whole. In order to understand the mechanism driving the…

Populations and Evolution · Quantitative Biology 2015-06-05 Korinna T. Allhoff , Daniel Ritterskamp , Björn C. Rall , Barbara Drossel , Christian Guill

In this paper, we consider a two species chemotaxis system of parabolic-parabolic-elliptic type with Lotka-Volterra type competition terms in heterogeneous media. We first find various conditions on the parameters which guarantee the global…

Analysis of PDEs · Mathematics 2018-06-11 Tahir Bachar Issa , Wenxian Shen
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