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Biomedical researchers face increasing challenges in navigating millions of publications in diverse domains. Traditional search engines typically return articles as ranked text lists, offering little support for global exploration or…

Information Retrieval · Computer Science 2026-01-29 Huan He , Xueqing Peng , Yutong Xie , Qijia Liu , Chia-Hsuan Chang , Lingfei Qian , Brian Ondov , Qiaozhu Mei , Hua Xu

Thinking of todays web search scenario which is mainly keyword based, leads to the need of effective and meaningful search provided by Semantic Web. Existing search engines are vulnerable to provide relevant answers to users query due to…

Information Retrieval · Computer Science 2013-11-26 Debajyoti Mukhopadhyay , Manoj Sharma , Gajanan Joshi , Trupti Pagare , Adarsha Palwe

Capturing the semantics of related biological concepts, such as genes and mutations, is of significant importance to many research tasks in computational biology such as protein-protein interaction detection, gene-drug association…

Computation and Language · Computer Science 2020-07-01 Qingyu Chen , Kyubum Lee , Shankai Yan , Sun Kim , Chih-Hsuan Wei , Zhiyong Lu

Disease name recognition and normalization, which is generally called biomedical entity linking, is a fundamental process in biomedical text mining. Recently, neural joint learning of both tasks has been proposed to utilize the mutual…

Computation and Language · Computer Science 2021-04-22 Shogo Ujiie , Hayate Iso , Shuntaro Yada , Shoko Wakamiya , Eiji Aramaki

Tables on the Web contain a vast amount of knowledge in a structured form. To tap into this valuable resource, we address the problem of table retrieval: answering an information need with a ranked list of tables. We investigate this…

Information Retrieval · Computer Science 2021-05-14 Shuo Zhang , Krisztian Balog

Background Semantic Web Technology (SWT) makes it possible to integrate and search the large volume of life science datasets in the public domain, as demonstrated by well-known linked data projects such as LODD, Bio2RDF, and Chem2Bio2RDF.…

Quantitative Methods · Quantitative Biology 2011-06-27 Qian Zhu , Yuyin Sun , Sashikiran Challa , Ying Ding , Michael S. Lajiness , David J. Wild

Existing medical RAG systems mainly leverage knowledge from medical knowledge bases, neglecting the crucial role of experiential knowledge derived from similar patient cases -- a key component of human clinical reasoning. To bridge this…

Computation and Language · Computer Science 2025-05-27 Yuxing Lu , Gecheng Fu , Wei Wu , Xukai Zhao , Sin Yee Goi , Jinzhuo Wang

There is a large number of online documents data sources available nowadays. The lack of structure and the differences between formats are the main difficulties to automatically extract information from them, which also has a negative…

This paper describes a new kind of knowledge representation and mining system which we are calling the Semantic Knowledge Graph. At its heart, the Semantic Knowledge Graph leverages an inverted index, along with a complementary uninverted…

Information Retrieval · Computer Science 2016-09-06 Trey Grainger , Khalifeh AlJadda , Mohammed Korayem , Andries Smith

Searching patients based on the relevance of their medical records is challenging because of the inherent implicit knowledge within the patients' medical records and queries. Such knowledge is known to the medical practitioners but may be…

Information Retrieval · Computer Science 2017-02-02 Nut Limsopatham , Craig Macdonald , Iadh Ounis

Semantic memory is the subsystem of human memory that stores knowledge of concepts or meanings, as opposed to life specific experiences. The organization of concepts within semantic memory can be understood as a semantic network, where the…

The inability to interpret the model prediction in semantically and visually meaningful ways is a well-known shortcoming of most existing computer-aided diagnosis methods. In this paper, we propose MDNet to establish a direct multimodal…

Computer Vision and Pattern Recognition · Computer Science 2017-07-11 Zizhao Zhang , Yuanpu Xie , Fuyong Xing , Mason McGough , Lin Yang

Current research in biology heavily depends on the availability and efficient use of information. In order to build new knowledge, various sources of biological data must often be combined. Semantic Web technologies, which provide a common…

Quantitative Methods · Quantitative Biology 2009-02-19 Claude Pasquier

Information retrieval from distributed heterogeneous data sources remains a challenging issue. As the number of data sources increases more intelligent retrieval techniques, focusing on information content and semantics, are required.…

Databases · Computer Science 2007-07-06 K. Munir , M. Odeh , R. McClatchey , S. Khan , I. Habib

The Semantic Web through technologies such to support the canonical representation information and presenting it to users in a method by which its meaning can be understood or at least communi- cated and interpreted by all parties. As the…

Networking and Internet Architecture · Computer Science 2008-08-12 Ian Oliver , Jukka Honkola

Ever since the vision was formulated, the Semantic Web has inspired many generations of innovations. Semantic technologies have been used to share vast amounts of information on the Web, enhance them with semantics to give them meaning, and…

Artificial Intelligence · Computer Science 2025-11-17 Ansgar Scherp , Gerd Groener , Petr Škoda , Katja Hose , Maria-Esther Vidal

Multimodal medical image fusion plays a crucial role in medical diagnosis by integrating complementary information from different modalities to enhance image readability and clinical applicability. However, existing methods mainly follow…

Computer Vision and Pattern Recognition · Computer Science 2025-05-20 Haozhe Xiang , Han Zhang , Yu Cheng , Xiongwen Quan , Wanwan Huang

Continual learning is essential for medical image classification systems to adapt to dynamically evolving clinical environments. The integration of multimodal information can significantly enhance continual learning of image classes.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-06 Jiantao Tan , Peixian Ma , Kanghao Chen , Zhiming Dai , Ruixuan Wang

In cyber-physical convergence scenarios information flows seamlessly between the physical and the cyber worlds. Here, users' mobile devices represent a natural bridge through which users process acquired information and perform actions. The…

Networking and Internet Architecture · Computer Science 2022-06-06 Matteo Mordacchini , Lorenzo Valerio , Marco Conti , Andrea Passarella

The exponential growth of scientific literature necessitates advanced tools for effective knowledge exploration. We present Knowledge Navigator, a system designed to enhance exploratory search abilities by organizing and structuring the…

Information Retrieval · Computer Science 2024-08-29 Uri Katz , Mosh Levy , Yoav Goldberg