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Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies…

Artificial Intelligence · Computer Science 2022-04-04 Da Chen Emily Koo , Heather Bowling , Kenneth Ashworth , David J. Heeger , Stefano Pacifico

Knowledge graphs, collectively as a knowledge network, have become critical tools for knowledge discovery in computable and explainable knowledge systems. Due to the semantic and structural complexities of biomedical data, these knowledge…

Other Quantitative Biology · Quantitative Biology 2025-09-29 Chunlei Wu , Hongfang Liu , Jason Flannick , Mark A. Musen , Andrew I. Su , Lawrence Hunter , Thomas M. Powers , Cathy H. Wu

The goal of case-based retrieval is to assist physicians in the clinical decision making process, by finding relevant medical literature in large archives. We propose a research that aims at improving the effectiveness of case-based…

Information Retrieval · Computer Science 2018-11-28 Stefano Marchesin

Semantic Web is, without a doubt, gaining momentum in both industry and academia. The word "Semantic" refers to "meaning" - a semantic web is a web of meaning. In this fast changing and result oriented practical world, gone are the days…

Information Retrieval · Computer Science 2015-03-17 Siddharth Gupta , Narina Thakur

Diagnosis of a clinical condition is a challenging task, which often requires significant medical investigation. Previous work related to diagnostic inferencing problems mostly consider multivariate observational data (e.g. physiological…

Computation and Language · Computer Science 2017-01-05 Aaditya Prakash , Siyuan Zhao , Sadid A. Hasan , Vivek Datla , Kathy Lee , Ashequl Qadir , Joey Liu , Oladimeji Farri

Integration between biology and information science benefits both fields. Many related models have been proposed, such as computational visual cognition models, computational motor control models, integrations of both and so on. In general,…

Computer Vision and Pattern Recognition · Computer Science 2016-03-28 Peijie Yin , Hong Qiao , Wei Wu , Lu Qi , YinLin Li , Shanlin Zhong , Bo Zhang

Biomedical research yields a wealth of information, much of which is only accessible through the literature. Consequently, literature search is an essential tool for building on prior knowledge in clinical and biomedical research. Although…

Information Retrieval · Computer Science 2024-04-10 Qiao Jin , Robert Leaman , Zhiyong Lu

Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproducing published results, either experimental data or…

Molecular Networks · Quantitative Biology 2017-06-19 Kai-Wen Liang , Qinsi Wang , Cheryl Telmer , Divyaa Ravichandran , Peter Spirtes , Natasa Miskov-Zivanov

Semantic concepts and relations encoded in domain-specific ontologies and other medical semantic resources play a crucial role in deciphering terms in medical queries and documents. The exploitation of these resources for tackling the…

Information Retrieval · Computer Science 2020-05-19 Mohammed Maree , Israa Noor , Khaled Rabayah , Mohammed Belkhatir , Saadat M. Alhashmi

Semantic network research has seen a resurgence from its early history in the cognitive sciences with the inception of the Semantic Web initiative. The Semantic Web effort has brought forth an array of technologies that support the…

Artificial Intelligence · Computer Science 2021-08-23 Marko A. Rodriguez , Johan Bollen

With the rapid growth of internet technologies, Web has become a huge repository of information and keeps growing exponentially under no editorial control. However the human capability to read, access and understand Web content remains…

Databases · Computer Science 2011-11-11 C. Ramesh , K. V. Chalapati Rao , A. Govardhan

The field of Web services is an important paradigm in distributed application development. Currently, many businesses are seeking to convert their applications into web services because of its ability to promote inter-operability among…

Software Engineering · Computer Science 2013-04-08 A Anji Reddy , S Sowmya Kamath

The WorldWideWeb (WWW) is a huge conservatory of web pages. Search Engines are key applications that fetch web pages for the user query. In the current generation web architecture, search engines treat keywords provided by the user as…

Information Retrieval · Computer Science 2014-03-03 Leena Giri G , Srikanth P L , S H Manjula , K R Venugopal , L M Patnaik

The existing information retrieval techniques do not consider the context of the keywords present in the user's queries. Therefore, the search engines sometimes do not provide sufficient information to the users. New methods based on the…

Information Retrieval · Computer Science 2010-04-28 M. Barathi , S. Valli

Knowledge graphs are an increasingly common data structure for representing biomedical information. These knowledge graphs can easily represent heterogeneous types of information, and many algorithms and tools exist for querying and…

Ever-expanding volumes of biomedical text require automated semantic annotation techniques to curate and put to best use. An established field of research seeks to link mentions in text to knowledge bases such as those included in the UMLS…

Artificial Intelligence · Computer Science 2018-11-13 Genevieve Gorrell , Xingyi Song , Angus Roberts

Recognizing biomedical concepts in the text is vital for ontology refinement, knowledge graph construction, and concept relationship discovery. However, traditional concept recognition methods, relying on explicit mention identification,…

Computation and Language · Computer Science 2025-11-26 Shanshan Liu , Noriki Nishida , Rumana Ferdous Munne , Narumi Tokunaga , Yuki Yamagata , Kouji Kozaki , Yuji Matsumoto

In the field of machine learning, data understanding is the practice of getting initial insights in unknown datasets. Such knowledge-intensive tasks require a lot of documentation, which is necessary for data scientists to grasp the meaning…

Databases · Computer Science 2018-06-14 Markus Schröder , Christian Jilek , Jörn Hees , Andreas Dengel

This work falls in the areas of information retrieval and semantic web, and aims to improve the evaluation of web search tools. Indeed, the huge number of information on the web as well as the growth of new inexperienced users creates new…

Information Retrieval · Computer Science 2012-12-12 Abdelkrim Bouramoul , Mohamed-Khireddine Kholladi , Bich-Liên Doan

The Covid-19 pandemic has caused a spur in the medical research literature. With new research advances in understanding the virus, there is a need for robust text mining tools which can process, extract and present answers from the…

Information Retrieval · Computer Science 2021-08-04 Souvik Das , Sougata Saha , Rohini K. Srihari