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We present Etymo (https://etymo.io), a discovery engine to facilitate artificial intelligence (AI) research and development. It aims to help readers navigate a large number of AI-related papers published every week by using a novel form of…

Information Retrieval · Computer Science 2018-01-29 Weijian Zhang , Jonathan Deakin , Nicholas J. Higham , Shuaiqiang Wang

Progress in biomedical Named Entity Recognition (NER) and Entity Linking (EL) is currently hindered by a fragmented data landscape, a lack of resources for building explainable models, and the limitations of semantically-blind evaluation…

Computation and Language · Computer Science 2025-11-17 Nishant Mishra , Wilker Aziz , Iacer Calixto

We explore the potential for combining generative AI with grammar-based visualizations for biomedical data discovery. In our prototype, we use a multi-agent system to generate visualization specifications and apply filters. These…

Human-Computer Interaction · Computer Science 2025-09-23 Devin Lange , Shanghua Gao , Pengwei Sui , Austen Money , Priya Misner , Marinka Zitnik , Nils Gehlenborg

It is now commonplace to observe that we are facing a deluge of online information. Researchers have of course long acknowledged the potential value of this information since digital traces make it possible to directly observe, describe and…

Computation and Language · Computer Science 2015-07-09 Thierry Poibeau , Pablo Ruiz

Semantic Web is actually an extension of the current one in that it represents information more meaningfully for humans and computers alike. It enables the description of contents and services in machine-readable form, and enables…

Artificial Intelligence · Computer Science 2010-06-24 Mohammad Mustafa Taye

The use of deep neural models for diagnosis prediction from clinical text has shown promising results. However, in clinical practice such models must not only be accurate, but provide doctors with interpretable and helpful results. We…

In the scientific digital libraries, some papers from different research communities can be described by community-dependent keywords even if they share a semantically similar topic. Articles that are not tagged with enough keyword…

Digital Libraries · Computer Science 2018-06-22 Hussein T. Al-Natsheh , Lucie Martinet , Fabrice Muhlenbach , Fabien Rico , Djamel A. Zighed

Biomedical documents such as Electronic Health Records (EHRs) contain a large amount of information in an unstructured format. The data in EHRs is a hugely valuable resource documenting clinical narratives and decisions, but whilst the text…

Computation and Language · Computer Science 2019-12-24 Zeljko Kraljevic , Daniel Bean , Aurelie Mascio , Lukasz Roguski , Amos Folarin , Angus Roberts , Rebecca Bendayan , Richard Dobson

The majority of big data is unstructured and of this majority the largest chunk is text. While data mining techniques are well developed and standardized for structured, numerical data, the realm of unstructured data is still largely…

Artificial Intelligence · Computer Science 2015-06-24 Carlo A. Trugenberger

We analyzed Medical Subject Headings (MeSH) from 21.6 million research articles indexed by PubMed to map this vast space of entities and their relations, providing insights into the origins and future of biomedical convergence. Detailed…

Digital Libraries · Computer Science 2023-06-27 Dong Yang , Ioannis Pavlidis , Alexander M. Petersen

Now a day's, search engines are been most widely used for extracting information's from various resources throughout the world. Where, majority of searches lies in the field of biomedical for retrieving related documents from various…

Information Retrieval · Computer Science 2009-12-14 Jayanthi Manicassamy , P. Dhavachelvan

Knowledge mining is the process of deriving new and useful knowledge from vast volumes of data and background knowledge. Modern healthcare organizations regularly generate huge amount of electronic data stored in the databases. These data…

Logic in Computer Science · Computer Science 2011-07-26 Nittaya Kerdprasop , Kittisak Kerdprasop

Despite the excitement behind biomedical artificial intelligence (AI), access to high-quality, diverse, and large-scale data - the foundation for modern AI systems - is still a bottleneck to unlocking its full potential. To address this…

Engineering a Web search engine offering effective and efficient information retrieval is a challenging task. This document presents our experiences from designing and developing a Web search engine offering a wide spectrum of…

Medical dialogue generation aims to generate responses according to a history of dialogue turns between doctors and patients. Unlike open-domain dialogue generation, this requires background knowledge specific to the medical domain.…

Computation and Language · Computer Science 2023-03-16 Chen Tang , Hongbo Zhang , Tyler Loakman , Chenghua Lin , Frank Guerin

Concept learning is a form of supervised machine learning that operates on knowledge bases in description logics. State-of-the-art concept learners often rely on an iterative search through a countably infinite concept space. In each…

Machine Learning · Statistics 2026-03-13 Louis Mozart Kamdem Teyou , Caglar Demir , Axel-Cyrille Ngonga Ngomo

We present a system that uses a learned autocompletion mechanism to facilitate rapid creation of semi-structured clinical documentation. We dynamically suggest relevant clinical concepts as a doctor drafts a note by leveraging features from…

Machine Learning · Computer Science 2020-07-31 Divya Gopinath , Monica Agrawal , Luke Murray , Steven Horng , David Karger , David Sontag

Since the era of big data, the Internet has been flooded with all kinds of information. Browsing information through the Internet has become an integral part of people's daily life. Unlike the news data and social data in the Internet, the…

Information Retrieval · Computer Science 2022-10-26 Yang Jiang , Zhe Xue , Ang Li

Mechanistic interpretability is an emerging diagnostic approach for neural models that has gained traction in broader natural language processing domains. This paradigm aims to provide attribution to components of neural systems where…

Information Retrieval · Computer Science 2025-01-20 Andrew Parry , Catherine Chen , Carsten Eickhoff , Sean MacAvaney

Scientific digital libraries play a critical role in the development and dissemination of scientific literature. Despite dedicated search engines, retrieving relevant publications from the ever-growing body of scientific literature remains…

Information Retrieval · Computer Science 2021-06-29 Florian Boudin , Béatrice Daille , Evelyne Jacquey , Jian-Yun Nie
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