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The ability to automatically detect certain types of cells or cellular subunits in microscopy images is of significant interest to a wide range of biomedical research and clinical practices. Cell detection methods have evolved from…

Computer Vision and Pattern Recognition · Computer Science 2018-02-22 Yao Xue , Nilanjan Ray

The one-body reduced density matrix (1-RDM) of a many-body system at zero temperature gives direct access to many observables, such as the charge density, kinetic energy and occupation numbers. It would be desirable to express it as a…

Computational Physics · Physics 2021-01-27 Jack Wetherell , Andrea Costamagna , Matteo Gatti , Lucia Reining

Autoencoders have achieved great success in various computer vision applications. The autoencoder learns appropriate low dimensional image representations through the self-supervised paradigm, i.e., reconstruction. Existing studies mainly…

Computer Vision and Pattern Recognition · Computer Science 2023-04-18 Jianzhang Zheng , Hao Shen , Jian Yang , Xuan Tang , Mingsong Chen , Hui Yu , Jielong Guo , Xian Wei

Lossy compression has become an important technique to reduce data size in many domains. This type of compression is especially valuable for large-scale scientific data, whose size ranges up to several petabytes. Although Autoencoder-based…

Machine Learning · Computer Science 2024-07-03 Hieu Le , Jian Tao

Reliable analysis of intracellular dynamic processes in time-lapse fluorescence microscopy images requires complete and accurate tracking of all small particles in all time frames of the image sequences. A fundamental first step towards…

Image and Video Processing · Electrical Eng. & Systems 2024-08-16 Yao Yao , Ihor Smal , Ilya Grigoriev , Anna Akhmanova , Erik Meijering

Classification with a large number of classes is a key problem in machine learning and corresponds to many real-world applications like tagging of images or textual documents in social networks. If one-vs-all methods usually reach top…

Machine Learning · Computer Science 2019-06-25 Thomas Gerald , Aurélia Léon , Nicolas Baskiotis , Ludovic Denoyer

Obtaining semantic labels on a large scale radiology image database (215,786 key images from 61,845 unique patients) is a prerequisite yet bottleneck to train highly effective deep convolutional neural network (CNN) models for image…

Computer Vision and Pattern Recognition · Computer Science 2016-03-28 Xiaosong Wang , Le Lu , Hoo-chang Shin , Lauren Kim , Isabella Nogues , Jianhua Yao , Ronald Summers

A novel variational autoencoder is developed to model images, as well as associated labels or captions. The Deep Generative Deconvolutional Network (DGDN) is used as a decoder of the latent image features, and a deep Convolutional Neural…

Machine Learning · Statistics 2016-09-29 Yunchen Pu , Zhe Gan , Ricardo Henao , Xin Yuan , Chunyuan Li , Andrew Stevens , Lawrence Carin

Deep learning has significantly advanced medical imaging analysis, yet variations in image resolution remain an overlooked challenge. Most methods address this by resampling images, leading to either information loss or computational…

Computer Vision and Pattern Recognition · Computer Science 2025-03-14 Ashay Patel , Michela Antonelli , Sebastien Ourselin , M. Jorge Cardoso

Deep Learning models enjoy considerable success in Natural Language Processing. While deep architectures produce useful representations that lead to improvements in various tasks, they are often difficult to interpret. This makes the…

Computation and Language · Computer Science 2013-04-29 Christian Scheible , Hinrich Schuetze

Surface crack segmentation poses a challenging computer vision task as background, shape, colour and size of cracks vary. In this work we propose optimized deep encoder-decoder methods consisting of a combination of techniques which yield…

Computer Vision and Pattern Recognition · Computer Science 2021-08-27 Jacob König , Mark Jenkins , Mike Mannion , Peter Barrie , Gordon Morison

The high dimensional and semantically complex nature of textual Big data presents significant challenges for text clustering, which frequently lead to suboptimal groupings when using conventional techniques like k-means or hierarchical…

Computation and Language · Computer Science 2025-08-25 Mohammad Wali Ur Rahman , Ric Nevarez , Lamia Tasnim Mim , Salim Hariri

The use of fluorescent molecules to create long sequences of low-density, diffraction-limited images enables highly-precise molecule localization. However, this methodology requires lengthy imaging times, which limits the ability to view…

Image and Video Processing · Electrical Eng. & Systems 2024-03-26 Yair Ben Sahel , Yonina C. Eldar

Semantic segmentation is a critical step in automated image interpretation and analysis where pixels are classified into one or more predefined semantically meaningful classes. Deep learning approaches for semantic segmentation rely on…

Computer Vision and Pattern Recognition · Computer Science 2023-07-10 Tushar Kataria , Beatrice Knudsen , Shireen Elhabian

Sparse autoencoders (SAEs) have lately been used to uncover interpretable latent features in large language models. By projecting dense embeddings into a much higher-dimensional and sparse space, learned features become disentangled and…

Machine Learning · Computer Science 2025-07-30 Viktoria Schuster

Deep learning-based nuclei segmentation and classification in pathology images typically rely on large-scale pixel-level manual annotations, which are costly and difficult to obtain across diverse tissues and staining conditions. To address…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Kazuya Nishimura , Ryoma Bise , Haruka Hirose , Yasuhiro Kojima

Feature selection is a dimensionality reduction technique that selects a subset of representative features from high dimensional data by eliminating irrelevant and redundant features. Recently, feature selection combined with sparse…

Computer Vision and Pattern Recognition · Computer Science 2018-04-24 Siwei Feng , Marco F. Duarte

Recent advances in 3D scanning technology have enabled the deployment of 3D models in various industrial applications like digital twins, remote inspection and reverse engineering. Despite their evolving performance, 3D scanners, still…

Computer Vision and Pattern Recognition · Computer Science 2021-11-29 Stavros Nousias , Gerasimos Arvanitis , Aris S. Lalos , Konstantinos Moustakas

In recent years, the field of single-cell data analysis has seen a marked advancement in the development of clustering methods. Despite advancements, most of these algorithms still concentrate on analyzing the provided single-cell matrix…

Machine Learning · Computer Science 2023-12-18 Dayu Hu , Ke Liang , Hao Yu , Xinwang Liu

Hyperspectral image analysis often requires selecting the most informative bands instead of processing the whole data without losing the key information. Existing band reduction (BR) methods have the capability to reveal the nonlinear…

Computer Vision and Pattern Recognition · Computer Science 2018-12-03 Muhammad Ahmad , Asad Khan , Adil Mehmood Khan , Rasheed Hussain