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By their very nature microscopy images of cells and tissues consist of a limited number of object types or components. In contrast to most natural scenes, the composition is known a priori. Decomposing biological images into semantically…

Computer Vision and Pattern Recognition · Computer Science 2019-09-04 Avelino Javer , Jens Rittscher

Reducing dimensionality is a key preprocessing step in many data analysis applications to address the negative effects of the curse of dimensionality and collinearity on model performance and computational complexity, to denoise the data or…

Machine Learning · Computer Science 2023-03-07 Federico Zocco , Seán McLoone

Gene annotation has traditionally required direct comparison of DNA sequences between an unknown gene and a database of known ones using string comparison methods. However, these methods do not provide useful information when a gene does…

Machine Learning · Computer Science 2019-09-17 James K. Senter , Taylor M. Royalty , Andrew D. Steen , Amir Sadovnik

We propose to leverage denoising autoencoder networks as priors to address image restoration problems. We build on the key observation that the output of an optimal denoising autoencoder is a local mean of the true data density, and the…

Computer Vision and Pattern Recognition · Computer Science 2017-03-30 Siavash Arjomand Bigdeli , Matthias Zwicker

Clustering algorithms have significantly improved along with Deep Neural Networks which provide effective representation of data. Existing methods are built upon deep autoencoder and self-training process that leverages the distribution of…

Computer Vision and Pattern Recognition · Computer Science 2021-09-17 Xin Ma , Won Hwa Kim

Disentangling the encodings of neural models is a fundamental aspect for improving interpretability, semantic control and downstream task performance in Natural Language Processing. Currently, most disentanglement methods are unsupervised…

Computation and Language · Computer Science 2023-02-17 Danilo S. Carvalho , Giangiacomo Mercatali , Yingji Zhang , Andre Freitas

Extreme Multi-label classification (XML) is an important yet challenging machine learning task, that assigns to each instance its most relevant candidate labels from an extremely large label collection, where the numbers of labels, features…

Machine Learning · Computer Science 2019-04-15 Bingyu Wang , Li Chen , Wei Sun , Kechen Qin , Kefeng Li , Hui Zhou

Spectroscopy represents the ideal observational method to maximally extract information from galaxies regarding their star formation and chemical enrichment histories. However, absorption spectra of galaxies prove rather challenging at high…

Instrumentation and Methods for Astrophysics · Physics 2025-10-10 Oliver Camilleri , Zahra Sharbaf , Ignacio Ferreras

Deep Learning based methods have emerged as the indisputable leaders for virtually all image restoration tasks. Especially in the domain of microscopy images, various content-aware image restoration (CARE) approaches are now used to improve…

Computer Vision and Pattern Recognition · Computer Science 2021-03-02 Mangal Prakash , Alexander Krull , Florian Jug

The unification of low-level perception and high-level reasoning is a long-standing problem in artificial intelligence, which has the potential to not only bring the areas of logic and learning closer together but also demonstrate how…

Artificial Intelligence · Computer Science 2019-11-27 Anton Fuxjaeger , Vaishak Belle

DeepTensor is a computationally efficient framework for low-rank decomposition of matrices and tensors using deep generative networks. We decompose a tensor as the product of low-rank tensor factors (e.g., a matrix as the outer product of…

This paper proposes an autoencoder (AE) that is used for improving the performance of once-class classifiers for the purpose of detecting anomalies. Traditional one-class classifiers (OCCs) perform poorly under certain conditions such as…

Machine Learning · Computer Science 2020-01-01 Kasra Babaei , ZhiYuan Chen , Tomas Maul

With the increasing number of deep multi-wavelength galaxy surveys, the spectral energy distribution (SED) of galaxies has become an invaluable tool for studying the formation of their structures and their evolution. In this context,…

Instrumentation and Methods for Astrophysics · Physics 2017-07-12 Joana Frontera-Pons , Florent Sureau , Jerome Bobin , Emeric Le Floc'h

Research in the past years introduced Steered Mixture-of-Experts (SMoE) as a framework to form sparse, edge-aware models for 2D- and higher dimensional pixel data, applicable to compression, denoising, and beyond, and capable to compete…

Image and Video Processing · Electrical Eng. & Systems 2023-05-08 Elvira Fleig , Erik Bochinski , Thomas Sikora

Binarization plays a key role in the automatic information retrieval from document images. This process is usually performed in the first stages of documents analysis systems, and serves as a basis for subsequent steps. Hence it has to be…

Computer Vision and Pattern Recognition · Computer Science 2018-09-07 Jorge Calvo-Zaragoza , Antonio-Javier Gallego

The applications of traditional statistical feature selection methods to high-dimension, low sample-size data often struggle and encounter challenging problems, such as overfitting, curse of dimensionality, computational infeasibility, and…

Machine Learning · Statistics 2023-12-19 Kexuan Li , Fangfang Wang , Lingli Yang , Ruiqi Liu

In contrast to fully-supervised models, self-supervised representation learning only needs a fraction of data to be labeled and often achieves the same or even higher downstream performance. The goal is to pre-train deep neural networks on…

Machine Learning · Computer Science 2025-04-09 Friederike Baier , Sebastian Mair , Samuel G. Fadel

Deep learning had already demonstrated its power in medical images, including denoising, classification, segmentation, etc. All these applications are proposed to automatically analyze medical images beforehand, which brings more…

Image and Video Processing · Electrical Eng. & Systems 2020-11-05 Shao-Cheng Wen , Yu-Jen Chen , Zihao Liu , Wujie Wen , Xiaowei Xu , Yiyu Shi , Tsung-Yi Ho , Qianjun Jia , Meiping Huang , Jian Zhuang

Clustering is a fundamental task in data analysis. Recently, deep clustering, which derives inspiration primarily from deep learning approaches, achieves state-of-the-art performance and has attracted considerable attention. Current deep…

Machine Learning · Computer Science 2020-02-13 Deyu Bo , Xiao Wang , Chuan Shi , Meiqi Zhu , Emiao Lu , Peng Cui

Single-cell RNA sequencing (scRNA-seq) has revolutionized our ability to analyze gene expression at the cellular level. By providing data on gene expression for each individual cell, scRNA-seq generates large datasets with thousands of…

Computational Complexity · Computer Science 2025-02-11 Md Romizul Islam , Swakkhar Shatabda