Related papers: Building a Balanced k-d Tree in O(kn log n) Time

Different spatial objects that vary in their characteristics, such as molecular biology and geography, are presented in spatial areas. Methods to organize, manage, and maintain those objects in a structured manner are required. Data mining…

We seek to perform efficient queries for the predecessor among $n$ values stored in $k$ sorted arrays. Evading the $\Omega(n \log k)$ lower bound from merging $k$ arrays, we support predecessor queries in $O(\log n)$ time after $O(n…

The paper presents a technique for constructing noisy data structures called a walking tree. We apply it for a Red-Black tree (an implementation of a Self-Balanced Binary Search Tree) and a segment tree. We obtain the same complexity of the…

We study the private $k$-median and $k$-means clustering problem in $d$ dimensional Euclidean space. By leveraging tree embeddings, we give an efficient and easy to implement algorithm, that is empirically competitive with state of the art…

We consider the well-studied pattern counting problem: given a permutation $\pi \in \mathbb{S}_n$ and an integer $k > 1$, count the number of order-isomorphic occurrences of every pattern $\tau \in \mathbb{S}_k$ in $\pi$. Our first result…

The input to the $k$-median for lines problem is a set $L$ of $n$ lines in $\mathbb{R}^d$, and the goal is to compute a set of $k$ centers (points) in $\mathbb{R}^d$ that minimizes the sum of squared distances over every line in $L$ and its…

We consider a generalization of $k$-median and $k$-center, called the {\em ordered $k$-median} problem. In this problem, we are given a metric space $(\mathcal{D},\{c_{ij}\})$ with $n=|\mathcal{D}|$ points, and a non-increasing weight…

In this paper, we present fixed-parameter tractability algorithms for both the undirected and directed versions of the Spanning Tree Isomorphism Problem, parameterized by the size $k$ of a redundant set. A redundant set is a collection of…

In this paper we describe an algorithm that embeds a graph metric $(V,d_G)$ on an undirected weighted graph $G=(V,E)$ into a distribution of tree metrics $(T,D_T)$ such that for every pair $u,v\in V$, $d_G(u,v)\leq d_T(u,v)$ and…

We study distorted metrics on binary trees in the context of phylogenetic reconstruction. Given a binary tree $T$ on $n$ leaves with a path metric $d$, consider the pairwise distances $\{d(u,v)\}$ between leaves. It is well known that these…

There are few, if any, algorithms in statistical phylogenetics which are used more heavily than Felsenstein's 1973 pruning method for computing the likelihood of a tree. We present LvD, (Likelihood via Decomposition), an alternative to…

In this paper, we generalize the method of using two parallel versions of the lifted MRD code from the existing work [1]. The Delsarte theorem of the rank distribution of MRD codes is an important part to count codewords in our…

The Wasserstein distance is a discrepancy measure between probability distributions, defined by an optimal transport problem. It has been used for various tasks such as retrieving similar items in high-dimensional images or text data. In…

Dual-tree algorithms are a widely used class of branch-and-bound algorithms. Unfortunately, developing dual-tree algorithms for use with different trees and problems is often complex and burdensome. We introduce a four-part logical split:…

This work focuses on the definition and study of the n-dimensional k-vector, an algorithm devised to perform orthogonal range searching in static databases with multiple dimensions. The methodology first finds the order in which to search…

In this paper, a sorting technique is presented that takes as input a data set whose primary key domain is known to the sorting algorithm, and works with an time efficiency of O(n+k), where k is the primary key domain. It is shown that the…

The $k$-Means clustering problem on $n$ points is NP-Hard for any dimension $d\ge 2$, however, for the 1D case there exists exact polynomial time algorithms. Previous literature reported an $O(kn^2)$ time dynamic programming algorithm that…

In phylogenetics, a central problem is to infer the evolutionary relationships between a set of species $X$; these relationships are often depicted via a phylogenetic tree -- a tree having its leaves univocally labeled by elements of $X$…

We introduce K-tree in an information retrieval context. It is an efficient approximation of the k-means clustering algorithm. Unlike k-means it forms a hierarchy of clusters. It has been extended to address issues with sparse…

We present an empirical analysis of data structures for approximate nearest neighbor searching. We compare the well-known optimized kd-tree splitting method against two alternative splitting methods. The first, called the sliding-midpoint…