Related papers: On the String Consensus Problem and the Manhattan …
We propose a very fast approximate Markov Chain Monte Carlo (MCMC) sampling framework that is applicable to a large class of sparse Bayesian inference problems, where the computational cost per iteration in several models is of order…
We treat a version of the multiple-choice secretary problem called the multiple-choice duration problem, in which the objective is to maximize the time of possession of relatively best objects. It is shown that, for the $m$--choice duration…
Designing efficient, effective, and consistent metric clustering algorithms is a significant challenge attracting growing attention. Traditional approaches focus on the stability of cluster centers; unfortunately, this neglects the…
$k$-means++ \cite{arthur2007k} is a widely used clustering algorithm that is easy to implement, has nice theoretical guarantees and strong empirical performance. Despite its wide adoption, $k$-means++ sometimes suffers from being slow on…
This paper introduces a framework for speeding up Bayesian inference conducted in presence of large datasets. We design a Markov chain whose transition kernel uses an (unknown) fraction of (fixed size) of the available data that is randomly…
We consider the problem of identifying tandem scattered subsequences within a string. Our algorithm identifies a longest subsequence which occurs twice without overlap in a string. This algorithm is based on the Hunt-Szymanski algorithm,…
The input to the $k$-median for lines problem is a set $L$ of $n$ lines in $\mathbb{R}^d$, and the goal is to compute a set of $k$ centers (points) in $\mathbb{R}^d$ that minimizes the sum of squared distances over every line in $L$ and its…
Due to the increased availability of large datasets of biological sequences, the tools for sequence comparison are now relying on efficient alignment-free approaches to a greater extent. Most of the alignment-free approaches require the…
We study the problem of metrical service systems with multiple servers (MSSMS), which generalizes two well-known problems -- the $k$-server problem, and metrical service systems. The MSSMS problem is to service requests, each of which is an…
We present a new streaming algorithm for the $k$-Mismatch problem, one of the most basic problems in pattern matching. Given a pattern and a text, the task is to find all substrings of the text that are at the Hamming distance at most $k$…
Classic similarity measures of strings are longest common subsequence and Levenshtein distance (i.e., the classic edit distance). A classic similarity measure of curves is dynamic time warping. These measures can be computed by simple…
Searching for all occurrences of a pattern in a text is a fundamental problem in computer science with applications in many other fields, like natural language processing, information retrieval and computational biology. Sampled string…
A well-known bottleneck of Min-Sum-of-Square Clustering (MSSC, the celebrated $k$-means problem) is to tackle the presence of outliers. In this paper, we propose a Partial clustering variant termed PMSSC which considers a fixed number of…
Recently, a novel coded compressed sensing (CCS) approach was proposed in [1] for dealing with the scalability problem for large sensing matrices in massive machine-type communications. The approach is to divide the compressed sensing (CS)…
We consider minimum-cardinality Manhattan connected sets with arbitrary demands: Given a collection of points $P$ in the plane, together with a subset of pairs of points in $P$ (which we call demands), find a minimum-cardinality superset of…
Given a n points in two dimensional space, a Manhattan Network G is a network that connects all n points with either horizontal or vertical edges, with the property that for any two point in G should be connected by a Manhattan path and…
Computation on compressed strings is one of the key approaches to processing massive data sets. We consider local subsequence recognition problems on strings compressed by straight-line programs (SLP), which is closely related to…
Constrained decoding enables Language Models (LMs) to produce samples that provably satisfy hard constraints. However, existing constrained-decoding approaches often distort the underlying model distribution, a limitation that is especially…
Practitioners of Bayesian statistics have long depended on Markov chain Monte Carlo (MCMC) to obtain samples from intractable posterior distributions. Unfortunately, MCMC algorithms are typically serial, and do not scale to the large…
We investigate the stability of a Sequential Monte Carlo (SMC) method applied to the problem of sampling from a target distribution on $\mathbb{R}^d$ for large $d$. It is well known that using a single importance sampling step one produces…