Related papers: On the String Consensus Problem and the Manhattan …

In many real-world database systems, a large fraction of the data is represented by strings: sequences of letters over some alphabet. This is because strings can easily encode data arising from different sources. It is often crucial to…

We consider the streaming complexity of a fundamental task in approximate pattern matching: the $k$-mismatch problem. It asks to compute Hamming distances between a pattern of length $n$ and all length-$n$ substrings of a text for which the…

Given two equally long, uniformly random binary strings, the expected length of their longest common subsequence (LCS) is asymptotically proportional to the strings' length. Finding the proportionality coefficient $\gamma$, i.e. the limit…

Let $X_1, X_2, ..., X_s$ and $Y_1, Y_2, ..., Y_t$ be strings over an alphabet $\Sigma$, where $s$ and $t$ are positive integers. The longest common subsequence and substring problem for multiple strings $X_1, X_2, ..., X_s$ and $Y_1, Y_2,…

We introduce synchronization strings as a novel way of efficiently dealing with synchronization errors, i.e., insertions and deletions. Synchronization errors are strictly more general and much harder to deal with than commonly considered…

The minimum circuit size problem (MCSP) is a string compression problem with a parameter $s$ in which, given the truth table of a Boolean function over inputs of length $n$, one must answer whether it can be computed by a Boolean circuit of…

Multiple kernel clustering (MKC) is committed to achieving optimal information fusion from a set of base kernels. Constructing precise and local kernel matrices is proved to be of vital significance in applications since the unreliable…

When implementing Markov Chain Monte Carlo (MCMC) algorithms, perturbation caused by numerical errors is sometimes inevitable. This paper studies how perturbation of MCMC affects the convergence speed and Monte Carlo estimation accuracy.…

The problem of identification of statistically significant patterns in a sequence of data has been applied to many domains such as intrusion detection systems, financial models, web-click records, automated monitoring systems, computational…

Nonlinear non-Gaussian state-space models arise in numerous applications in statistics and signal processing. In this context, one of the most successful and popular approximation techniques is the Sequential Monte Carlo (SMC) algorithm,…

In the $k$-mismatch problem we are given a pattern of length $n$ and a text and must find all locations where the Hamming distance between the pattern and the text is at most $k$. A series of recent breakthroughs have resulted in an…

$\kC$ clustering is a fundamental classification problem, where the task is to categorize the given collection of entities into $k$ clusters and come up with a representative for each cluster, so that the maximum distance between an entity…

Branch-and-bound (BnB) algorithms are widely used to solve combinatorial problems, and the performance crucially depends on its branching heuristic.In this work, we consider a typical problem of maximum common subgraph (MCS), and propose a…

The minimum sum-of-squares clustering problem (MSSC), also known as $k$-means clustering, refers to the problem of partitioning $n$ data points into $k$ clusters, with the objective of minimizing the total sum of squared Euclidean distances…

Clustering is a fundamental technique in data analysis and machine learning, used to group similar data points together. Among various clustering methods, the Minimum Sum-of-Squares Clustering (MSSC) is one of the most widely used. MSSC…

It is shown that the length of the algorithmic minimal sufficient statistic of a binary string x, either in a representation of a finite set, computable semimeasure, or a computable function, has a length larger than the computational depth…

A key limitation of sampling algorithms for approximate inference is that it is difficult to quantify their approximation error. Widely used sampling schemes, such as sequential importance sampling with resampling and Metropolis-Hastings,…

Numbers and numerical vectors account for a large portion of data. However, recently the amount of string data generated has increased dramatically. Consequently, classifying string data is a common problem in many fields. The most widely…

We provide a randomized linear time approximation scheme for a generic problem about clustering of binary vectors subject to additional constrains. The new constrained clustering problem encompasses a number of problems and by solving it,…

Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…