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In recent years, Whole Genome Sequencing (WGS) evolved from a futuristic-sounding research project to an increasingly affordable technology for determining complete genome sequences of complex organisms, including humans. This prompts a…

Cryptography and Security · Computer Science 2015-02-17 Erman Ayday , Emiliano De Cristofaro , Jean-Pierre Hubaux , Gene Tsudik

Deep neural networks require large amounts of resources which makes them hard to use on resource constrained devices such as Internet-of-things devices. Offloading the computations to the cloud can circumvent these constraints but…

Machine Learning · Computer Science 2018-05-31 Sam Leroux , Tim Verbelen , Pieter Simoens , Bart Dhoedt

DNA sequencing allows for the determination of the genetic code of an organism, and therefore is an indispensable tool that has applications in Medicine, Life Sciences, Evolutionary Biology, Food Sciences and Technology, and Agriculture. In…

Quantum Physics · Physics 2023-04-24 Nouhaila Innan , Muhammad Al-Zafar Khan

Several technological applications require the translation of a protein into a nucleic acid that codes for it (``backtranslation''). The degeneracy of the genetic code makes this translation ambiguous; moreover, not every translation is…

Biological Physics · Physics 2007-05-23 Andres Moreira

We are entering the era of ubiquitous genetic information for research, clinical care, and personal curiosity. Sharing these datasets is vital for rapid progress in understanding the genetic basis of human diseases. However, one growing…

Genomics · Quantitative Biology 2013-10-14 Yaniv Erlich , Arvind Narayanan

Our world is ambiguous and this is reflected in the data we use to train our algorithms. This is particularly true when we try to model natural processes where collected data is affected by noisy measurements and differences in measurement…

Machine Learning · Computer Science 2023-07-19 Jörg K. H. Franke , Frederic Runge , Frank Hutter

Novel technologies in genomics allow creating data in exascale dimension with relatively minor effort of human and laboratory and thus monetary resources compared to capabilities only a decade ago. While the availability of this data…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-11-10 Sandra Gesing , Thomas Richard Connor , Ian Taylor

The lack of uniqueness arising by oversampling of Fourier coefficients is shown to provide a way of transmitting hidden information. A basic encoding/decoding system, developed on the basis of such a possibility, is discussed. The system is…

General Mathematics · Mathematics 2007-05-23 Jody R. Miotke , Laura Rebollo-Neira

The availability of high-fidelity energy networks brings significant value to academic and commercial research. However, such releases also raise fundamental concerns related to privacy and security as they can reveal sensitive commercial…

Artificial Intelligence · Computer Science 2020-04-20 Ferdinando Fioretto , Terrence W. K. Mak , Pascal Van Hentenryck

The ubiquitous use of face recognition has sparked increasing privacy concerns, as unauthorized access to sensitive face images could compromise the information of individuals. This paper presents an in-depth study of the privacy protection…

Computer Vision and Pattern Recognition · Computer Science 2023-08-22 Yuxi Mi , Yuge Huang , Jiazhen Ji , Minyi Zhao , Jiaxiang Wu , Xingkun Xu , Shouhong Ding , Shuigeng Zhou

The tendencies described in this work were revealed in the course of examination of adenine and uracil distribution in the mRNA encoding sequence. The study also discusses the usage of codons occupied by the amino acid arginine in the table…

Other Quantitative Biology · Quantitative Biology 2009-08-11 Denis A. Semenov

Privacy-preserving genomic data sharing is prominent to increase the pace of genomic research, and hence to pave the way towards personalized genomic medicine. In this paper, we introduce ($\epsilon , T$)-dependent local differential…

Cryptography and Security · Computer Science 2021-02-16 Emre Yilmaz , Tianxi Ji , Erman Ayday , Pan Li

Gene finding is the task of identifying the locations of coding sequences within the vast amount of genetic code contained in the genome. With an ever increasing quantity of raw genome sequences, gene finding is an important avenue towards…

Genomics · Quantitative Biology 2025-05-07 Frederikke I. Marin , Dennis Pultz , Wouter Boomsma

Dataset obfuscation refers to techniques in which random noise is added to the entries of a given dataset, prior to its public release, to protect against leakage of private information. In this work, dataset obfuscation under two…

Information Theory · Computer Science 2023-05-15 Mahshad Shariatnasab , Farhad Shirani , S. Sitharma Iyengar

A method for encoding information in DNA sequences is described. The method is based on the precision-resolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis…

Information Theory · Computer Science 2020-05-14 Siddharth Jain , Farzad Farnoud , Moshe Schwartz , Jehoshua Bruck

Protecting source code against reverse engineering and theft is an important problem. The goal is to carry out computations using confidential algorithms on an untrusted party while ensuring confidentiality of algorithms. This problem has…

Cryptography and Security · Computer Science 2016-12-13 Johannes Schneider , Thomas Locher

The availability of genomic data is essential to progress in biomedical research, personalized medicine, etc. However, its extreme sensitivity makes it problematic, if not outright impossible, to publish or share it. As a result, several…

Genomics · Quantitative Biology 2022-01-19 Bristena Oprisanu , Georgi Ganev , Emiliano De Cristofaro

The DNA cryptography is a new and very promising direction in cryptography research. DNA can be used in cryptography for storing and transmitting the information, as well as for computation. Although in its primitive stage, DNA cryptography…

Cryptography and Security · Computer Science 2012-03-07 Kang Ning

Homomorphic encryption is a sophisticated encryption technique that allows computations on encrypted data to be done without the requirement for decryption. This trait makes homomorphic encryption appropriate for safe computation in…

Cryptography and Security · Computer Science 2023-05-11 Nimish Jain , Aswani Kumar Cherukuri

Codes have been used for centuries to convey secret information.To a cryptanalyst, the interception of a code is only the first step in recovering a secret message.Deoxyribonucleic acid (DNA) is a biological and molecular code.Through the…

Cryptography and Security · Computer Science 2008-01-31 O. Okunoye Babatunde