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Understanding the genetic basis of phenotypic plasticity is crucial for predicting and managing climate change effects on wild plants and crops. Here, we combined crop modeling and quantitative genetics to study the genetic control of oil…

Assessing the performance and the characteristics (e.g. yield, quality, disease resistance, abiotic stress tolerance) of new varieties is a key component of crop performance improvement. However, the variety testing process is presently…

Quantitative Methods · Quantitative Biology 2017-01-05 Pierre Casadebaig , Emmanuelle Mestries , Philippe Debaeke

A crop can be viewed as a complex system with outputs (e.g. yield) that are affected by inputs of genetic, physiology, pedo-climatic and management information. Application of numerical methods for model exploration assist in evaluating the…

Quantitative Methods · Quantitative Biology 2016-01-26 Pierre Casadebaig , Bangyou Zheng , Scott Chapman , Neil Huth , Robert Faivre , Karine Chenu

Numerical plant models can predict the outcome of plant traits modifications resulting from genetic variations, on plant performance, by simulating physiological processes and their interaction with the environment. Optimization methods…

Quantitative Methods · Quantitative Biology 2017-06-20 Victor Picheny , Pierre Casadebaig , Ronan Trépos , Robert Faivre , David Da Silva , Patrick Vincourt , Evelyne Costes

Plant breeding programs use data obtained from multi-environment selection experiments to produce improved varieties with the ultimate aim of maintaining high levels of genetic gain. Selection accuracy can be improved with the use of…

Methodology · Statistics 2026-05-13 Brian R Cullis , Alison B Smith , David GD Hughes , David Butler

Sunflower (Helianthus annuus L.) grain and oil quality are defined by grain weight and oil percentage, oil fatty acid composition and the amount of antioxidants. The aim of this work was to establish and validate a simple model, based on…

Quantitative Methods · Quantitative Biology 2017-07-04 Gustavo A. Pereyra-Irujo , Luis A. N. Aguirrezábal

Accounting for the annual climatic variability is a well-known issue for simulation-based studies of environmental models. It often requires intensive sampling (e.g., averaging the simulation outputs over many climatic series), which…

Optimization and Control · Mathematics 2015-09-21 Victor Picheny , Ronan Trépos , Bastien Poublan , Pierre Casadebaig

The application of spectral-shifting films in greenhouses to shift green light to red light has shown variable growth responses across crop species. However, the yield enhancement of crops under altered light quality is related to the…

Quantitative Methods · Quantitative Biology 2025-11-20 Jun Hyeun Kang , Jung Eek Son , Tae In Ahn

Breeding for new crop characteristics and adjusting management practices are critical avenues to mitigate yield loss and maintain yield stability under a changing climate. However, identifying high-performing plant traits and management…

Populations and Evolution · Quantitative Biology 2022-06-09 Jennifer Hsiao , Soo-Hyung Kim , Dennis J. Timlin , Nathaniel D. Mueller , Abigail L. S. Swann

Accurate prediction of crop yield supported by scientific and domain-relevant insights, can help improve agricultural breeding, provide monitoring across diverse climatic conditions and thereby protect against climatic challenges to crop…

Background and Aims: Prediction of phenotypic traits from new genotypes under untested environmental conditions is crucial to build simulations of breeding strategies to improve target traits. Although the plant response to environmental…

Statistics Theory · Mathematics 2010-10-27 Veronique Letort , Paul Mahe , Paul-Henry Cournède , Philippe De Reffye , Brigitte Courtois

Plant breeding is one of the key strategies for further enhancement of crop yields; however, effective breeding strategies require phenotypic characterisation of the available germplasm. This study sought to characterise the phenotypic…

Other Quantitative Biology · Quantitative Biology 2020-08-12 Gabriele Mongiano , Patrizia Titone , Simone Pagnoncelli , Davide Sacco , Luigi Tamborini , Roberto Pilu , Simone Bregaglio

Global food security depends on predicting crop responses to climate variability, yet process based crop models remain too computationally expensive for large scale exploration of genotype and environment interactions. Here we develop a…

Computational Engineering, Finance, and Science · Computer Science 2026-05-25 Mojdeh Saadati , Juan Panelo , Gustavo Visentini , Soumik Sarkar , Carlos Messina , Baskar Ganapathysubramanian

This paper introduces a Bayesian hierarchical modeling framework within a fully probabilistic setting for crop yield estimation, model selection, and uncertainty forecasting under multiple future greenhouse gas emission scenarios. By…

Applications · Statistics 2025-07-30 Dan Li , Vassili Kitsios , David Newth , Terence John O'Kane

Accurate and precise crop yield prediction is invaluable for decision making at both farm levels and regional levels. To make yield prediction, crop models are widely used for their capability to simulate hypothetical scenarios. While…

Machine Learning · Computer Science 2024-04-02 Yuji Saikai

Eradicating hunger and malnutrition is a key development goal of the 21st century. We address the problem of optimally identifying seed varieties to reliably increase crop yield within a risk-sensitive decision-making framework.…

Machine Learning · Computer Science 2017-11-17 Huaiyang Zhong , Xiaocheng Li , David Lobell , Stefano Ermon , Margaret L. Brandeau

Growing mixtures of annual arable crop species or genotypes is a promising way to improve crop production without increasing agricultural inputs. To design optimal crop mixtures, choices of species, genotypes, sowing proportion, plant…

Plant breeding underpins global food security through incremental, accumulating improvements in crop yield, quality and sustainability, achieved via repeated cycles of crop ranking, selection and crossing. Climate change disrupts this…

Machine Learning · Computer Science 2026-05-07 Aike Potze , Fred van Eeuwijk , Ioannis N. Athanasiadis

Optimizing management practices and selecting the best cultivar for planting play a significant role in increasing agricultural food production and decreasing environmental footprint. In this study, we develop optimization frameworks under…

Optimization and Control · Mathematics 2022-08-10 Faezeh Akhavizadegan , Javad Ansarifar , Lizhi Wang , Sotirios V. Archontoulis

As the world population increases and arable land decreases, it becomes vital to improve the productivity of the agricultural land available. Given the weather and soil properties, farmers need to take critical decisions such as which seed…

Computer Vision and Pattern Recognition · Computer Science 2017-10-26 Gunjan Sehgal , Bindu Gupta , Kaushal Paneri , Karamjit Singh , Geetika Sharma , Gautam Shroff
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