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This study introduces a framework for constructing enviromics matrices in mixed models to integrate genetic and environmental data to enhance phenotypic predictions in plant breeding. Enviromics utilizes diverse data sources, such as…

Quantitative Methods · Quantitative Biology 2026-02-05 B. A. Trevisan , V. S. Junqueira , B. M. Florencio , A. S. G. Coelho , G. E. Marcatti , R. T. Resende

The adoption of agroecological practices will be crucial to address the challenges of climate change and biodiversity loss. Such practices favor the cultivation of plants in complex mixtures with layouts differing from the monoculture…

Populations and Evolution · Quantitative Biology 2024-09-26 Julian Talbot , Pascal Viot , David Colliaux

Global gridded crop models (GGCMs) are crucial to project the impacts of climate change on agricultural productivity and assess associated risks for food security. Despite decades of development, state-of-the-art GGCMs retain substantial…

Plasticity-led evolution is a form of evolution where a change in the environment induces novel traits via phenotypic plasticity, after which the novel traits are genetically accommodated over generations under the novel environment. This…

Populations and Evolution · Quantitative Biology 2023-01-18 Eden Tian Hwa Ng , Akira R. Kinjo

Crop yield prediction typically involves the utilization of either theory-driven process-based crop growth models, which have proven to be difficult to calibrate for local conditions, or data-driven machine learning methods, which are known…

Accurate prediction of crop states (e.g., phenology stages and cold hardiness) is essential for timely farm management decisions such as irrigation, fertilization, and canopy management to optimize crop yield and quality. While traditional…

Artificial Intelligence · Computer Science 2026-05-20 William Solow , Paola Pesantez-Cabrera , Markus Keller , Lav Khot , Sandhya Saisubramanian , Alan Fern

Heritability is a central parameter in quantitative genetics, both from an evolutionary and a breeding perspective. For plant traits heritability is traditionally estimated by comparing within and between genotype variability. This approach…

Climate change is a major threat to crop potential and is characterized by both long-term shifts in temperature and precipitation patterns as well as increased occurrence of extreme weather events, these extreme weather events are the most…

Biomolecules · Quantitative Biology 2025-07-10 Jing Li , Giulia Forghieri , Danny Geelen , Patrick du Jardin , Patrick H. Brown

Building sustainable food systems that are resilient to climate change will require improved agricultural management and policy. One common practice that is well-known to benefit crop yields is crop rotation, yet there remains limited…

Applications · Statistics 2025-10-21 Dan M. Kluger , Stefania Di Tommaso , David B. Lobell

Emulation of complex computer simulations have become an effective tool in the exploration of the behaviour of the simulated processes. Agriculture is one such area where the simulation of crop growth, nutrition, soil condition and…

Computation · Statistics 2022-07-27 Muhammad Mahmudul Hasan , Jonathan Andrew Cumming

The concept of sustainable intensification in agriculture necessitates the implementation of management practices that prioritize sustainability without compromising productivity. However, the effects of such practices are known to depend…

Crop yield is a highly complex trait determined by multiple factors such as genotype, environment, and their interactions. Accurate yield prediction requires fundamental understanding of the functional relationship between yield and these…

Machine Learning · Computer Science 2019-06-12 Saeed Khaki , Lizhi Wang

A looming challenge for agriculture is sustainable intensification of food production to feed the growing human population. Current chemical and genetic technologies used to manage plant diseases are highly vulnerable to pathogen evolution…

Populations and Evolution · Quantitative Biology 2014-02-13 Alexey Mikaberidze , Bruce McDonald , Sebastian Bonhoeffer

Agriculture plays a crucial role in the global economy and social stability, and accurate crop yield prediction is essential for rational planting planning and decision-making. This study focuses on crop yield Time-Series Data prediction.…

Computers and Society · Computer Science 2025-02-18 Yueru Yan , Yue Wang , Jialin Li , Jingwei Zhang , Xingye Mo

Crop production needs to increase in a sustainable manner to meet the growing global demand for food. To identify crop varieties with high yield potential, plant scientists and breeders evaluate the performance of hundreds of lines in…

Image and Video Processing · Electrical Eng. & Systems 2019-06-25 Ali Moghimi , Ce Yang , James A. Anderson

We present a specialized procedural model for generating synthetic agricultural scenes, focusing on soybean crops, along with various weeds. This model is capable of simulating distinct growth stages of these plants, diverse soil…

We model evolution of plants in a world, made up of different locations, with multiple environments (mutually exclusive and collectively exhaustive subsets of locations). Each environment (landmass) has temperature, rainfall, and other…

Populations and Evolution · Quantitative Biology 2019-05-27 Alexander , Khazatsky , Albert Yu , Zihao Zhao , Gabe Zuckerman

Both evolution and ecology have long been concerned with the impact of variable environmental conditions on observed levels of genetic diversity within and between species. We model the evolution of a quantitative trait under selection that…

Populations and Evolution · Quantitative Biology 2014-11-17 Hannes Svardal , Claus Rueffler , Joachim Hermisson

Phenotypic plasticity and its evolution may help evolutionary rescue in a novel and stressful environment, especially if environmental novelty reveals cryptic genetic variation that enables the evolution of increased plasticity. However,…

Populations and Evolution · Quantitative Biology 2016-09-23 Jaime Ashander , Luis-Miguel Chevin , Marissa L. Baskett

Ecological selection is a major driver of community assembly. Selection is classified as stabilizing when species with intermediate trait values gain the highest reproductive success, whereas selection is considered directional when fitness…

Populations and Evolution · Quantitative Biology 2021-05-13 DeMalach Niv , Po-Ju Ke , Tadashi Fukami