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Agricultural production is affected by climate extremes, which are increasing because of global warming. This motivates the need of a proper evaluation of the agricultural production systems resilience to enhance food security, market…

Populations and Evolution · Quantitative Biology 2019-02-08 Matteo Zampieri , Christof Weissteiner , Bruna Grizzetti , Andrea Toreti , Maurits van den Berg M. , Frank Dentener

Experimental corn hybrids are created in plant breeding programs by crossing two parents, so-called inbred and tester, together. Identification of best parent combinations for crossing is challenging since the total number of possible cross…

Machine Learning · Computer Science 2020-05-26 Saeed Khaki , Zahra Khalilzadeh , Lizhi Wang

A plant growth simulation can be characterized as a reconstructed visual representation of a plant or plant system. The phenotypic characteristics and plant structures are controlled by the scene environment and other contextual attributes.…

Computer Vision and Pattern Recognition · Computer Science 2024-09-23 Mohamed Debbagh , Yixue Liu , Zhouzhou Zheng , Xintong Jiang , Shangpeng Sun , Mark Lefsrud

Post-genomic research deals with challenging problems in screening genomes of organisms for particular functions or potential for being the targets of genetic engineering for desirable biological features. 'Phenotyping' of wild type and…

Quantitative Methods · Quantitative Biology 2010-09-06 Hesam T. Dashti , Jernej Tonejc , Adel Ardalan , Alireza F. Siahpirani , Sabrina Guettes , Zohreh Sharif , Liya Wang , Amir H. Assadi

Plant or soil water status are required in many scientific fields to understand plant responses to drought. Because the transcriptomic response to abiotic conditions, such as water deficit, reflects plant water status, genomic tools could…

Modelling genetic phenomena affecting biological traits is important for the development of agriculture as it allows breeders to predict the potential of breeding for certain traits. One such phenomenon is heterosis or hybrid vigor:…

Populations and Evolution · Quantitative Biology 2015-03-24 Peter M. F. Emmrich , Hannah E. Roberts , Vera Pancaldi

Sustainable agriculture in the 21st century requires the production of sufficient food while reducing the environmental impact and safeguarding human livelihoods. Many studies have confirmed agricultural diversification practices such as…

Physics and Society · Physics 2024-03-12 Estelle Raveloaritiana , Thomas Cherico Wanger

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Eya Cherif , Arthur Ouaknine , Luke A. Brown , Phuong D. Dao , Kyle R. Kovach , Bing Lu , Daniel Mederer , Hannes Feilhauer , Teja Kattenborn , David Rolnick

The effect of phenotypic plasticity on evolution, the so-called Baldwin effect, has been studied extensively for more than 100 years. Plasticity is known to influence the speed of evolution towards a specific genetic configuration, but…

Populations and Evolution · Quantitative Biology 2017-12-27 Stefano Bennati , Leonel Aguilar , Dirk Helbing

Complementarity among species with different traits is one of the basic processes affecting biodiversity, defined as the number of species in the ecosystem. We present here a soluble model ecosystem in which the species are characterized by…

Disordered Systems and Neural Networks · Physics 2009-11-07 Viviane M. de Oliveira , J. F. Fontanari

In the context of global warming, tree populations rely on two primary mechanisms of adaptation: phenotypic plasticity, which enables individuals to adjust their behavior in response to environmental stress, and genetic evolution, driven by…

Populations and Evolution · Quantitative Biology 2026-01-27 Sirine Boucenna , Vasilis Dakos , Gaël Raoul

Image-based crop growth modeling can substantially contribute to precision agriculture by revealing spatial crop development over time, which allows an early and location-specific estimation of relevant future plant traits, such as leaf…

Computer Vision and Pattern Recognition · Computer Science 2024-06-25 Lukas Drees , Dereje T. Demie , Madhuri R. Paul , Johannes Leonhardt , Sabine J. Seidel , Thomas F. Döring , Ribana Roscher

Crop yield is affected by various soil and environmental parameters and can vary significantly. Therefore, a crop yield estimation model which can predict pre-harvest yield is required for food security. The study is conducted on tea forms…

Machine Learning · Computer Science 2025-12-30 Nisar Ahmed , Hafiz Muhammad Shahzad Asif , Gulshan Saleem , Muhammad Usman Younus

We introduce a simple yet effective early fusion method for crop yield prediction that handles multiple input modalities with different temporal and spatial resolutions. We use high-resolution crop yield maps as ground truth data to train…

Bacteria often develop distinct phenotypes to adapt to environmental stress. In particular, they can produce biofilms, dense communities of bacteria that live in a complex extracellular matrix. Bacterial biofilms provide a safe haven from…

Quantitative Methods · Quantitative Biology 2025-08-29 Stephen Williams , Daravuth Cheam , Michele K. Nishiguchi , Suzanne S. Sindi , Shilpa Khatri , Erica M. Rutter

The prediction of crop yields internationally is a crucial objective in agricultural research. Thus, this study implements 6 regression models (Linear, Tree, Gradient Descent, Gradient Boosting, K Nearest Neighbors, and Random Forest) to…

Improving the efficiency of agriculture is a growing priority due to food security issues, environmental concerns, and economics. Precision agriculture and variable rate application technology could enable increases in yield while…

Systems and Control · Electrical Eng. & Systems 2023-06-02 William Rohde , Fulvio Forni

Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

The influence of climate on biodiversity is an important ecological question. Various theories try to link climate change to allelic richness and therefore to predict the impact of global warming on genetic diversity. We model the…

Applications · Statistics 2008-07-17 Liliane Bel , Avner Bar-Hen , Rachid Cheddadi , Rémy Petit

Reliable seed yield estimation is an indispensable step in plant breeding programs geared towards cultivar development in major row crops. The objective of this study is to develop a machine learning (ML) approach adept at soybean…