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We study the formation of spot patterns seen in a variety of bacterial species when the bacteria are subjected to oxidative stress due to hazardous byproducts of respiration. Our approach consists of coupling the cell density field to a…

The consumption of microbial-contaminated food and water is responsible for the deaths of millions of people annually. Smartphone-based microscopy systems are portable, low-cost, and more accessible alternatives for the detection of Giardia…

Image and Video Processing · Electrical Eng. & Systems 2024-08-07 Suprim Nakarmi , Sanam Pudasaini , Safal Thapaliya , Pratima Upretee , Retina Shrestha , Basant Giri , Bhanu Bhakta Neupane , Bishesh Khanal

Flagellated bacteria, such as Escherichia coli, perform directed motion in gradients of concentration of attractants and repellents in a process called chemotaxis. The E. coli chemotaxis signaling pathway is a model for signal transduction,…

Biological Physics · Physics 2015-03-11 Anne-Florence Bitbol , Ned S. Wingreen

This article presents a new class of batch-fabricated, low-power and highly sensitive chemiresistive sensors. We first present the design, fabrication and characterization of batch-fabricated sidewall etched vertical nanogap…

Applied Physics · Physics 2020-06-24 Aishwaryadev Banerjee

Everyday we are exposed to various chemicals via food additives, cleaning and cosmetic products and medicines -- and some of them might be toxic. However testing the toxicity of all existing compounds by biological experiments is neither…

Machine Learning · Statistics 2015-03-06 Thomas Unterthiner , Andreas Mayr , Günter Klambauer , Sepp Hochreiter

A hidden sector containing light long-lived particles provides a well-motivated place to find new physics. The recently proposed MATHUSLA experiment has the potential to be extremely sensitive to light particles originating from rare meson…

High Energy Physics - Phenomenology · Physics 2018-04-04 Jared A. Evans

Hospital-acquired infections represent significant health and financial burdens to society. Clostridium difficile (C. difficile) is a particularly challenging bacteria with the potential to cause severe diarrhea and death. One mode of…

Fluid Dynamics · Physics 2013-10-22 G. Traverso , S. Laken , C. -C. Lu , R. Maa , R. Langer , L. Bourouiba

Foodborne illnesses are gastrointestinal conditions caused by consuming contaminated food. Restaurants are critical venues to investigate outbreaks because they share sourcing, preparation, and distribution of foods. Public reporting of…

Information Retrieval · Computer Science 2025-10-21 Eden Shaveet , Crystal Su , Daniel Hsu , Luis Gravano

Because of their abundance of amino acids, polysaccharides, and many other nutrients that benefit human beings, mushrooms are deservedly popular as dietary cuisine both worldwide and in China. However, if people eat poisonous fungi by…

Computer Vision and Pattern Recognition · Computer Science 2022-10-20 Baiming Zhang , Ying Zhao , Zhixiang Li

Bacterial heterogeneity is pivotal for adaptation to diverse environments, posing significant challenges in microbial diagnostics and therapeutic interventions. Recent advancements in high-resolution optical microscopy have revolutionized…

Biological Physics · Physics 2025-01-06 Dohyeon Lee , Hyun-Seung Lee , Moosung Lee , Minhee Kang , Geon Kim , Tae Yeul Kim , Nam Yong Lee , YongKeun Park

White dwarf planetary systems provide a unique way to measure the bulk composition of exoplanetary material. Extrasolar asteroids/comets/moons which have survived the evolution of their host star can end up in the atmosphere of the white…

Earth and Planetary Astrophysics · Physics 2024-04-25 Siyi Xu , Laura K. Rogers , Simon Blouin

Presently, Covid-19 is a serious threat to the world at large. Efforts are being made to reduce disease screening times and in the development of a vaccine to resist this disease, even as thousands succumb to it everyday. We propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2021-08-10 Hmrishav Bandyopadhyay , Shuvayan Ghosh Dastidar , Bisakh Mondal , Biplab Banerjee , Nibaran Das

The bacterial SOS response is a cellular reaction to DNA damage, that, among other actions, triggers the expression of colicin - toxic bacteriocins in Escherichia coli that are released to kill close relatives competing for resources.…

Molecular Networks · Quantitative Biology 2018-05-08 Alexandra Götz , Matthias Lechner , Andreas Mader , Benedikt von Bronk , Erwin Frey , Madeleine Opitz

(abridged) The old Star Cluster (SC) systems surrounding any sofar investigated galaxy represent a powerful tool for the understanding of the cosmological evolution of their host galaxies. Phases of enhanced cluster formation can be…

Astrophysics · Physics 2007-05-23 P. Anders , R. de Grijs , U. Fritze-v. Alvensleben

We present a computational live bacteria detection system that periodically captures coherent microscopy images of bacterial growth inside a 60 mm diameter agar-plate and analyzes these time-lapsed holograms using deep neural networks for…

Malaria is mosquito-borne blood disease caused by parasites of the genus Plasmodium. Conventional diagnostic tool for malaria is the examination of stained blood cell of patient in microscope. The blood to be tested is placed in a slide and…

Image and Video Processing · Electrical Eng. & Systems 2018-03-30 Suman Kunwar

High-throughput molecular screening is required to investigate the origin and diffusion of antimicrobial resistance in pathogen outbreaks. The most frequent cause of human infection is Escherichia coli, which is dominated by sequence type…

Populations and Evolution · Quantitative Biology 2015-02-18 Tim Downing

Measuring microorganisms in food products is a critical issue for food safety and human health. Although various approaches for detecting low-levels of microorganisms in food have been developed, they require high-cost, complex equipment,…

Quantitative Methods · Quantitative Biology 2016-03-25 Jonghee Yoon , KyeoReh Lee , YongKeun Park

Antibiotic-resistant bacterial infection becomes one of the most serious risks to public health care today. However, discouragingly, the development of new antibiotics has been little progressed over the last decade. There is an urgent need…

Biomolecules · Quantitative Biology 2015-07-20 Jeong Chan Park , Myung-Hwan Jung

Tuberculosis (TB) is a chronic lung disease that occurs due to bacterial infection and is one of the top 10 leading causes of death. Accurate and early detection of TB is very important, otherwise, it could be life-threatening. In this…