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Background: The Epithelial-Mesenchymal Transition (EMT) endows epithelial-looking cells with enhanced migratory ability during embryonic development and tissue repair. EMT can also be co-opted by cancer cells to acquire metastatic potential…

The transition between epithelial and mesenchymal (EMT) is a fundamental cellular process that plays critical roles in development, cancer metastasis, and tissue wound healing. EMT is not a binary process but involves multiple partial EMT…

Cell Behavior · Quantitative Biology 2019-05-22 Jianhua Xing , Xiao-Jun Tian

We present the epithelial-to-mesenchymal transition (EMT) from two perspectives: experimental/technological and theoretical. We review the state of the current understanding of the regulatory networks that underlie EMT in three…

Epithelial-Mesenchymal Transition (EMT), and the corresponding reverse process, Mesenchymal-Epithelial Transition (MET), are dynamic and reversible cellular programs orchestrated by many changes at biochemical and morphological levels. A…

Molecular Networks · Quantitative Biology 2019-07-26 Shubham Tripathi , Jianhua Xing , Herbert Levine , Mohit Kumar Jolly

Understanding cell-fate decisions during tumorigenesis and metastasis is a major challenge in modern cancer biology. One canonical cell-fate decision that cancer cells undergo is Epithelial-to-Mesenchymal Transition (EMT) and its reverse…

Cell Behavior · Quantitative Biology 2015-05-29 Mohit Kumar Jolly , Marcelo Boareto , Bin Huang , Dongya Jia , Mingyang Lu , Jose N Onuchic , Herbert Levine , Eshel Ben-Jacob

Purpose of review: The epithelial-Mesenchymal Transition (EMT) and the generation of Cancer Stem Cells (CSC) are two fundamental aspects contributing to tumor growth, acquisition of resistance to therapy, formation of metastases, and tumor…

Molecular Networks · Quantitative Biology 2018-11-07 Federico Bocci , Herbert Levine , José Nelson Onuchic , Mohit Kumar Jolly

Collective cell migration is a hallmark of developmental and patho-physiological states, including wound healing and invasive cancer growth. The integrity of the expanding epithelial sheets can be influenced by extracellular cues, including…

Cancer cells have the plasticity to adjust their metabolic phenotypes for survival and metastasis. During metastasis, a developmental program known as the epithelial-mesenchymal transition (EMT) plays a critical role. There is extensive…

Cancer cells can acquire a spectrum of stable hybrid epithelial/mesenchymal (E/M) states during epithelial-mesenchymal transition (EMT). Cells in these hybrid E/M phenotypes often combine epithelial and mesenchymal features and tend to…

Cell Behavior · Quantitative Biology 2019-04-17 Dongya Jia , Xuefei Li , Federico Bocci , Shubham Tripathi , Youyuan Deng , Mohit Kumar Jolly , Jose N. Onuchic , Herbert Levine

During epithelial-mesenchymal transition (EMT), epithelial cells change their morphology, disperse, and gain mesenchymal-like characteristics. Usually, cells are categorized into discrete cell types or states based on gene expression and…

Cell Behavior · Quantitative Biology 2024-06-04 Akash Chandra Das , Debanga Raj Neog , Biplab Bose

miRNAs serve as crucial post-transcriptional regulators in various essential cell fate decision. However, the contribution of the mRNA-miRNA mutual regulation to bistability is not fully understood. Here, we built a set of mathematical…

Molecular Networks · Quantitative Biology 2016-09-05 Xiao-Jun Tian , Hang Zhang , Jingyu Zhang , Jianhua Xing

The so-called Mixed Feedback Loop (MFL) is a small two-gene network where protein A regulates the transcription of protein B and the two proteins form a heterodimer. It has been found to be statistically over-represented in statistical…

Molecular Networks · Quantitative Biology 2009-11-11 Paul Francois , Vincent Hakim

Tumor metastasis is one of the main factors responsible for the high fatality rate of cancer. Metastasis can occur after malignant cells transition from the epithelial phenotype to the mesenchymal phenotype. This transformation allows cells…

Molecular Networks · Quantitative Biology 2020-05-15 M. Ali Al-Radhawi , Eduardo D. Sontag

In this paper the application of Virtual Reference Feedback Tuning (VRFT) for control of nonlinear systems with regulators defined by Echo State Networks (ESN) and Long Short Term Memory (LSTM) networks is investigated. The capability of…

Systems and Control · Electrical Eng. & Systems 2023-01-18 William D'Amico , Marcello Farina , Giulio Panzani

Perpendicular exchange bias (EB), which combines the perpendicular magnetic anisotropy and the ferromagnetic (FM) - antiferromagnetic (AFM) exchange coupling, is extremely important in the high-density AFM spintronics. However, the…

Materials Science · Physics 2019-03-14 Qu Yang , Zhongqiang Hu , Yao Zhang , Wei Su , Bin Peng , Jingen Wu , Ziyao Zhou , Yun He , Wanzhao Cui , Zhiguang Wang , Ming Liu

We introduce a classical potentiostatic feedback mechanism that attenuates the dissipation in a quantum system arising from coupling to the surrounding thermodynamic bath, preserving the inter-state interference in an electronic excitation…

Mesoscale and Nanoscale Physics · Physics 2017-01-04 Chaitanya Gupta , Aldo Peña Perez , Sean Fischer , Stephen Weinreich , Boris Murmann , Roger T. Howe

We introduce an active version of the recently proposed finite Voronoi model of epithelial tissue. The resultant Active Finite Voronoi (AFV) model enables the study of both confluent and non-confluent geometries and transitions between…

Soft Condensed Matter · Physics 2023-11-08 Junxiang Huang , Herbert Levine , Dapeng Bi

Precise control of spin states and spin-spin interactions in atomic-scale magnetic structures is crucial for spin-based quantum technologies. A promising architecture is molecular spin systems, which offer chemical tunability and…

Within the tumor microenvironment (TME), cancer cells use mechanotransduction pathways to convert biophysical forces to biochemical signals. However, the underlying mechanisms and functional significance of these pathways remain largely…

As wounds heal, embryos develop, cancer spreads, or asthma progresses, the cellular monolayer undergoes glass transition between solid-like jammed and fluid-like flowing states. During some of these processes, the cells undergo an…

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