Related papers: Twins in words and long common subsequences in per…
In 1999 Lyngs{\o} and Pedersen proposed a conjecture stating that every binary circular word of length $n$ with equal number of zeros and ones has an antipalindromic linear subsequence of length at least $\frac{2}{3}n$. No progress over a…
We study a family of equivalence relations on $S_n$, the group of permutations on $n$ letters, created in a manner similar to that of the Knuth relation and the forgotten relation. For our purposes, two permutations are in the same…
We study long $r$-twins in random words and permutations. Motivated by questions posed in works of Dudek-Grytczuk-Ruci\'nski, we obtain the following. For a uniform word in $[k]^n$ we prove sharp one-sided tail bounds showing that the…
Let $a_1,\dotsc,a_n$ be a permutation of $[n]$. Two disjoint order-isomorphic subsequences are called \emph{twins}. We show that every permutation of $[n]$ contains twins of length $\Omega(n^{3/5})$ improving the trivial bound of…
Let $(X_i)_{i \geq 1}$ and $(Y_i)_{i\geq1}$ be two independent sequences of independent identically distributed random variables taking their values in a common finite alphabet and having the same law. Let $LC_n$ be the length of the…
A correlation is a binary vector that encodes all possible positions of overlaps of two words, where an overlap for an ordered pair of words (u,v) occurs if a suffix of word u matches a prefix of word v. As multiple pairs can have the same…
We consider the length L of the longest common subsequence of two randomly uniformly and independently chosen n character words over a k-ary alphabet. Subadditivity arguments yield that the expected value of L, when normalized by n,…
Vincular or dashed patterns resemble classical patterns except that some of the letters within an occurrence are required to be adjacent. We prove several infinite families of Wilf-equivalences for k-ary words involving vincular patterns…
We study decompositions of words into subwords that are in some sense similar, which means that one subword may be obtained from the other by a relatively simple transformation. Our main inspiration are shuffle squares, an intriguing class…
Tandem duplication in DNA is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain {\em et al.} (2016) proposed the study of codes that…
We consider the longest common subsequence (LCS) problem with the restriction that the common subsequence is required to consist of at least $k$ length substrings. First, we show an $O(mn)$ time algorithm for the problem which gives a…
Finding an Approximate Longest Common Substring (ALCS) within a given set $S=\{s_1,s_2,\ldots,s_m\}$ of $m \ge 2$ strings is a key problem in computational biology, such as identifying related mutations across multiple genetic sequences. We…
In this paper we consider the following problems: how many different subsets of Sigma^n can occur as set of all length-n factors of a finite word? If a subset is representable, how long a word do we need to represent it? How many such…
The Longest Common Subsequence (LCS) problem is a fundamental problem of sequence comparison. A natural approximation to this problem is a model in which every pairs of letters of two ``sequences'' are matched independently of the other…
The numbers we study in this paper are of the form $B_{n, p}(k)$, which is the number of binary words of length $n$ that contain the word $p$ (as a subsequence) exactly $k$ times. Our motivation comes from the analogous study of pattern…
In this paper, we study a series of algorithmic problems related to the subsequences occurring in the strings of a given language, under the assumption that this language is succinctly represented by a grammar generating it, or an automaton…
Finding the longest common subsequence in $k$-length substrings (LCS$k$) is a recently proposed problem motivated by computational biology. This is a generalization of the well-known LCS problem in which matching symbols from two sequences…
In this paper we define a new problem, motivated by computational biology, $LCSk$ aiming at finding the maximal number of $k$ length $substrings$, matching in both input strings while preserving their order of appearance. The traditional…
The complexity of an infinite word can be measured in several ways, the two most common measures being the subword complexity and the abelian complexity. In 2015, Rigo and Salimov introduced a family of intermediate complexities indexed by…
A pattern is encountered in a word if some infix of the word is the image of the pattern under some non-erasing morphism. A pattern $p$ is unavoidable if, over every finite alphabet, every sufficiently long word encounters $p$. A theorem by…