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Longest Common Subsequence ($LCS$) deals with the problem of measuring similarity of two strings. While this problem has been analyzed for decades, the recent interest stems from a practical observation that considering single characters is…
We consider a large family of equivalence relations on permutations in Sn that generalise those discovered by Knuth in his study of the Robinson-Schensted correspondence. In our most general setting, two permutations are equivalent if one…
A sequence of geometric random variables of length $n$ is a sequence of $n$ independent and identically distributed geometric random variables ($\Gamma_1, \Gamma_2, \dots, \Gamma_n$) where $\mathbb{P}(\Gamma_j=i)=pq^{i-1}$ for…
The problem of finding longest common subsequence (LCS) is one of the fundamental problems in computer science, which finds application in fields such as computational biology, text processing, information retrieval, data compression etc.…
In this work, we consider a variant of the classical Longest Common Subsequence problem called Doubly-Constrained Longest Common Subsequence (DC-LCS). Given two strings s1 and s2 over an alphabet A, a set C_s of strings, and a function Co…
The deletion distance between two binary words $u,v \in \{0,1\}^n$ is the smallest $k$ such that $u$ and $v$ share a common subsequence of length $n-k$. A set $C$ of binary words of length $n$ is called a $k$-deletion code if every pair of…
The nature of the alignment with gaps corresponding to a longest common subsequence (LCS) of two independent iid random sequences drawn from a finite alphabet is investigated. It is shown that such an optimal alignment typically matches…
Superpermutations are words over a finite alphabet containing every permutation as a factor. Finding the minimal length of a superpermutation is still an open problem. In this article, we introduce superpermutations matrices. We establish a…
Two permutations $s$ and $t$ are $k$-similar if they can be decomposed into subpermutations $s^1, \ldots, s^k$ and $t^1, \ldots, t^k$ such that $s^i$ is order-isomorphic to $t^i$ for all $i$. Recently, Dudek, Grytczuk and Ruci\'nski posed…
Two words are $k$-binomially equivalent whenever they share the same subwords, i.e., subsequences, of length at most $k$ with the same multiplicities. This is a refinement of both abelian equivalence and the Simon congruence. The…
We consider the expected length of the longest common subsequence between two random words of lengths $n$ and $(1-\varepsilon)kn$ over $k$-symbol alphabet. It is well-known that this quantity is asymptotic to $\gamma_{k,\varepsilon} n$ for…
Two same length words are $d$-equivalent if they have same descent set and same underlying alphabet. In particular, two same length permutations are $d$-equivalent if they have same descent set. The popularity of a pattern in a set of words…
Two strings of the same length are said to Cartesian-tree match (CT-match) if their Cartesian-trees are isomorphic [Park et al., TCS 2020]. Cartesian-tree matching is a natural model that allows for capturing similarities of numerical…
Fraenkel and Simpson showed that the number of distinct squares in a word of length n is bounded from above by 2n, since at most two distinct squares have their rightmost, or last, occurrence begin at each position. Improvements by Ilie to…
The Shortest Common Supersequence problem (SCS for short) consists in finding a shortest common supersequence of a finite set of words on a fixed alphabet Sigma. It is well-known that its decision version denoted [SR8] in [Garey and…
Covering arrays for words of length $t$ over a $d$ letter alphabet are $k \times n$ arrays with entries from the alphabet so that for each choice of $t$ columns, each of the $d^t$ $t$-letter words appears at least once among the rows of the…
First we consider pair-wise distances for literal objects consisting of finite binary files. These files are taken to contain all of their meaning, like genomes or books. The distances are based on compression of the objects concerned,…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
We introduce some new classes of words and permutations characterized by the second difference condition $\pi(i-1) + \pi(i+1) - 2\pi(i) \leq k$, which we call the $k$-convexity condition. We demonstrate that for any sized alphabet and…
We investigate the asymptotic standard deviation of the Longest Common Subsequence (LCS) of two independent i.i.d. sequences of length n. The first sequence is drawn from a three letter alphabet {0,1,a}, whilst the second sequence is…