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In this paper we describe compressed indexes that support pattern matching queries for strings with wildcards. For a constant size alphabet our data structure uses $O(n\log^{\varepsilon}n)$ bits for any $\varepsilon>0$ and reports all…

Data Structures and Algorithms · Computer Science 2014-01-06 Moshe Lewenstein , Yakov Nekrich , Jeffrey Scott Vitter

Automatic search of neural architectures for various vision and natural language tasks is becoming a prominent tool as it allows to discover high-performing structures on any dataset of interest. Nevertheless, on more difficult domains,…

Computer Vision and Pattern Recognition · Computer Science 2020-05-25 Vladimir Nekrasov , Chunhua Shen , Ian Reid

The classical, ubiquitous, predecessor problem is to construct a data structure for a set of integers that supports fast predecessor queries. Its generalization to weighted trees, a.k.a. the weighted ancestor problem, has been extensively…

Data Structures and Algorithms · Computer Science 2014-07-01 Pawel Gawrychowski , Moshe Lewenstein , Patrick K. Nicholson

We present a simple $O(n^4)$-time algorithm for computing optimal search trees with two-way comparisons. The only previous solution to this problem, by Anderson et al., has the same running time, but is significantly more complicated and is…

Data Structures and Algorithms · Computer Science 2022-02-14 Marek Chrobak , Mordecai Golin , J. Ian Munro , Neal E. Young

We study learning-augmented binary search trees (BSTs) via Treaps with carefully designed priorities. The result is a simple search tree in which the depth of each item $x$ is determined by its predicted weight $w_x$. Specifically, each…

Data Structures and Algorithms · Computer Science 2025-05-16 Jingbang Chen , Xinyuan Cao , Alicia Stepin , Li Chen

One of the main challenges for hierarchical clustering is how to appropriately identify the representative points in the lower level of the cluster tree, which are going to be utilized as the roots in the higher level of the cluster tree…

Machine Learning · Statistics 2021-11-16 Wen-Bo Xie , Zhen Liu , Jaideep Srivastava

Self-adjusting data structures are a classic approach to adapting the complexity of operations to the data access distribution. While several self-adjusting variants are known for both binary search trees and B-Trees, existing constructions…

Data Structures and Algorithms · Computer Science 2023-10-10 Alexander Slastin , Dan Alistarh , Vitaly Aksenov

We study the following substring suffix selection problem: given a substring of a string T of length n, compute its k-th lexicographically smallest suffix. This a natural generalization of the well-known question of computing the maximal…

Data Structures and Algorithms · Computer Science 2013-09-24 Maxim Babenko , Paweł Gawrychowski , Tomasz Kociumaka , Tatiana Starikovskaya

The rise of repetitive datasets has lately generated a lot of interest in compressed self-indexes based on dictionary compression, a rich and heterogeneous family that exploits text repetitions in different ways. For each such compression…

Data Structures and Algorithms · Computer Science 2020-12-17 Gonzalo Navarro , Nicola Prezza

Text retrieval using learned sparse representations of queries and documents has, over the years, evolved into a highly effective approach to search. It is thanks to recent advances in approximate nearest neighbor search-with the emergence…

Information Retrieval · Computer Science 2026-02-06 Sebastian Bruch , Martino Fontana , Franco Maria Nardini , Cosimo Rulli , Rossano Venturini

A new method for constructing minimum-redundancy binary prefix codes is described. Our method does not explicitly build a Huffman tree; instead it uses a property of optimal prefix codes to compute the codeword lengths corresponding to the…

Data Structures and Algorithms · Computer Science 2016-09-30 Ahmed Belal , Amr Elmasry

The paper addresses the problem of low-rank trace norm minimization. We propose an algorithm that alternates between fixed-rank optimization and rank-one updates. The fixed-rank optimization is characterized by an efficient factorization…

Optimization and Control · Mathematics 2013-06-04 B. Mishra , G. Meyer , F. Bach , R. Sepulchre

Fully indexable dictionaries (FID) store sets of integer keys while supporting rank/select queries. They serve as basic building blocks in many succinct data structures. Despite the great importance of FIDs, no known FID is succinct with…

Data Structures and Algorithms · Computer Science 2025-04-29 Jingxun Liang , Renfei Zhou

We consider the problem of supporting Rank() and Select() operations on a bit vector of length m with n 1 bits. The problem is considered in the succinct index model, where the bit vector is stored in "read-only" memory and an additional…

Data Structures and Algorithms · Computer Science 2015-03-19 Alexander Golynski , Alessio Orlandi , Rajeev Raman , S. Srinivasa Rao

We consider the {\it indexable dictionary} problem, which consists of storing a set $S \subseteq \{0,...,m-1\}$ for some integer $m$, while supporting the operations of $\Rank(x)$, which returns the number of elements in $S$ that are less…

Data Structures and Algorithms · Computer Science 2011-08-10 Rajeev Raman , Venkatesh Raman , Srinivasa Rao Satti

We consider the problem of minimizing the number of matrix-vector queries needed for accurate trace estimation in the dynamic setting where our underlying matrix is changing slowly, such as during an optimization process. Specifically, for…

Data Structures and Algorithms · Computer Science 2022-10-03 David P. Woodruff , Fred Zhang , Qiuyi Zhang

We study a document retrieval problem in the new framework where $D$ text documents are organized in a {\em category tree} with a pre-defined number $h$ of categories. This situation occurs e.g. with taxomonic trees in biology or subject…

Data Structures and Algorithms · Computer Science 2020-06-03 Djamal Belazzougui , Gregory Kucherov

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

Data Structures and Algorithms · Computer Science 2022-11-01 Laurentius Leonard , Shunsuke Inenaga , Hideo Bannai , Takuya Mieno

The computational cost of searching for new pulsars is a limiting factor for upcoming radio telescopes such as SKA. We introduce four new algorithms: an optimal constant-period search, a coherent tree search which permits optimal searching…

High Energy Astrophysical Phenomena · Physics 2016-10-24 Kendrick M. Smith

Suffix trees have recently become very successful data structures in handling large data sequences such as DNA or Protein sequences. Consequently parallel architectures have become ubiquitous. We present a novel alphabet-dependent parallel…

Data Structures and Algorithms · Computer Science 2017-04-20 Freeson Kaniwa , Venu Madhav Kuthadi , Otlhapile Dinakenyane , Heiko Schroeder