Related papers: Minimal Indices for Successor Search

Randomised algorithms often employ methods that can fail and that are retried with independent randomness until they succeed. Randomised data structures therefore often store indices of successful attempts, called seeds. If $n$ such seeds…

The linear-size suffix tries (LSTries) [Crochemore et al., TCS 2016] are a version of suffix trees in which the edge labels are single characters, yet are able to perform pattern matching queries in optimal time. Instead of explicitly…

This paper introduces a novel algorithm combination designed for fast one-to-many multicriteria shortest path search. A preprocessing algorithm excludes irrelevant vertices by building a smaller cover graph. A modified version of…

The fundamental question considered in algorithms on strings is that of indexing, that is, preprocessing a given string for specific queries. By now we have a number of efficient solutions for this problem when the queries ask for an exact…

Suffix trees are key and efficient data structure for solving string problems. A suffix tree is a compressed trie containing all the suffixes of a given text of length $n$ with a linear construction cost. In this work, we introduce an…

In this work, a new indexing technique of data streams called BSTree is proposed. This technique uses the method of data discretization, SAX [4], to reduce online the dimensionality of data streams. It draws on Btree to build the index and…

We propose a lightweight data structure for indexing and querying collections of NGS reads data in main memory. The data structure supports the interface proposed in the pioneering work by Philippe et al. for counting and locating $k$-mers…

Cartesian tree matching is a form of generalized pattern matching where a substring of the text matches with the pattern if they share the same Cartesian tree. This form of matching finds application for time series of stock prices and can…

Runtime predictive analyses enhance coverage of traditional dynamic analyses based bug detection techniques by identifying a space of feasible reorderings of the observed execution and determining if any of these witnesses the violation of…

In this paper, we propose an effective search procedure that interleaves two steps: subproblem generation and subproblem solution. We mainly focus on the first part. It consists of a variable domain value ranking based on reduced costs.…

Indexing is an effective way to support efficient query processing in large databases. Recently the concept of learned index, which replaces or complements traditional index structures with machine learning models, has been actively…

Let $\kappa(s,t)$ denote the maximum number of internally disjoint $st$-paths in an undirected graph $G$. We consider designing a compact data structure that answers $k$-bounded node connectivity queries: given $s,t \in V$ return…

We propose a family of very efficient hierarchical indexing schemes for ungapped, score matrix-based similarity search in large datasets of short (4-12 amino acid) protein fragments. This type of similarity search has importance in both…

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

The distinct elements problem is one of the fundamental problems in streaming algorithms --- given a stream of integers in the range $\{1,\ldots,n\}$, we wish to provide a $(1+\varepsilon)$ approximation to the number of distinct elements…

Existing path lookup routines in file systems need to construct an auxiliary index in memory or traverse the dentries of the directory file sequentially, which brings either heavy writes or large timing cost. This paper designs a novel path…

This paper introduces a search algorithm for index structures based on a B+ tree, specifically optimized for execution on a field-programmable gate array (FPGA). Our implementation efficiently traverses and reuses tree nodes by processing a…

The performance of today's in-memory indexes is bottlenecked by the memory latency/bandwidth wall. Processing-in-memory (PIM) is an emerging approach that potentially mitigates this bottleneck, by enabling low-latency memory access whose…

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

The $r$-index represented a breakthrough in compressed indexing of repetitive text collections, outperforming its alternatives by orders of magnitude in query time. Its space usage, $O(r)$ where $r$ is the number of runs in the…